RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 SENP1Q9P0U3 644 aa21.14■□□□□ 0.97
LSM4-201ENST00000252816 BCAP29Q9UHQ4 241 aa21.14■□□□□ 0.97
LSM4-201ENST00000252816 EXO1Q9UQ84 846 aaKnown RBP21.14■□□□□ 0.97
LSM4-201ENST00000252816 DNAJC15Q9Y5T4 150 aa21.14■□□□□ 0.97
LSM4-201ENST00000252816 NPIPB8E9PQR5 432 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 SLC28A1O00337 649 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 RGS16O15492 202 aaPredicted RBP21.13■□□□□ 0.97
LSM4-201ENST00000252816 CDC40O60508 579 aaKnown RBP eCLIP21.13■□□□□ 0.97
LSM4-201ENST00000252816 TUBBP07437 444 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 BPGMP07738 259 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 DDCP20711 480 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 CEBPEQ15744 281 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 UGT3A2Q3SY77 523 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 PRAMEF20Q5VT98 475 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 RNF165Q6ZSG1 346 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 MAMDC2Q7Z304 686 aaPredicted RBP21.13■□□□□ 0.97
LSM4-201ENST00000252816 FBXW8Q8N3Y1 598 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 C17orf47Q8NEP4 570 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 OR52R1Q8NGF1 315 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 ZNF675Q8TD23 568 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 CCDC120Q96HB5 630 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 ZIM3Q96PE6 472 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 NXF5Q9H1B4 397 aaKnown RBP21.13■□□□□ 0.97
LSM4-201ENST00000252816 ZDHHC11Q9H8X9 412 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 LRTM1Q9HBL6 345 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 MYNNQ9NPC7 610 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 RYDENQ9NUL5 291 aaKnown RBP21.13■□□□□ 0.97
LSM4-201ENST00000252816 CNOT11Q9UKZ1 510 aaKnown RBP21.13■□□□□ 0.97
LSM4-201ENST00000252816 NPFFR2Q9Y5X5 522 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 GTF3C1Q12789 2109 aa21.13■□□□□ 0.97
LSM4-201ENST00000252816 A0A1B0GTH9 108 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 SEC22BO75396 215 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 PDE9AO76083 593 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 LRATO95237 230 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 FGF4P08620 206 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 LINC00032P0C843 101 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 ABOP16442 354 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 TACR1P25103 407 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 EMDP50402 254 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 CASP6P55212 293 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 FBXW4P57775 412 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 NNATQ16517 81 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 EXOC3L1Q86VI1 746 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 SLC22A16Q86VW1 577 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 TICAM1Q8IUC6 712 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 PRR22Q8IZ63 422 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 SAMD14Q8IZD0 417 aaPredicted RBP21.12■□□□□ 0.97
LSM4-201ENST00000252816 TMEM251Q8N6I4 163 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 OR6Y1Q8NGX8 325 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 KAT2AQ92830 837 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 METTL2AQ96IZ6 378 aaKnown RBP21.12■□□□□ 0.97
LSM4-201ENST00000252816 EGLN2Q96KS0 407 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 ITPAQ9BY32 194 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 IL1RL2Q9HB29 575 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 GIMAP4Q9NUV9 329 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 C1orf109Q9NX04 203 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 ENTPD4Q9Y227 616 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 TRAF6Q9Y4K3 522 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 NBPF19A0A087WUL8 3843 aa21.12■□□□□ 0.97
LSM4-201ENST00000252816 ACOT7O00154 380 aa21.11■□□□□ 0.97
LSM4-201ENST00000252816 RGS14O43566 566 aa21.11■□□□□ 0.97
LSM4-201ENST00000252816 NME6O75414 186 aaPredicted RBP21.11■□□□□ 0.97
LSM4-201ENST00000252816 RPS6KA2Q15349 733 aa21.11■□□□□ 0.97
LSM4-201ENST00000252816 TNFAIP8L3Q5GJ75 292 aa21.11■□□□□ 0.97
LSM4-201ENST00000252816 CEP85LQ5SZL2 805 aa21.11■□□□□ 0.97
LSM4-201ENST00000252816 RGS9BPQ6ZS82 235 aa21.11■□□□□ 0.97
LSM4-201ENST00000252816 TWIST2Q8WVJ9 160 aa21.11■□□□□ 0.97
LSM4-201ENST00000252816 FCRL1Q96LA6 429 aa21.11■□□□□ 0.97
LSM4-201ENST00000252816 CNIH4Q9P003 139 aa21.11■□□□□ 0.97
LSM4-201ENST00000252816 CFL2Q9Y281 166 aa21.11■□□□□ 0.97
LSM4-201ENST00000252816 WBP11Q9Y2W2 641 aaKnown RBP21.11■□□□□ 0.97
LSM4-201ENST00000252816 SEC23IPQ9Y6Y8 1000 aaKnown RBP21.11■□□□□ 0.97
LSM4-201ENST00000252816 ZNF407Q9C0G0 2248 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 MYO1GB0I1T2 1018 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 CTIFO43310 598 aaKnown RBP21.1■□□□□ 0.97
LSM4-201ENST00000252816 CHEK2O96017 543 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 COL8A1P27658 744 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 ABCD3P28288 659 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 PTGS2P35354 604 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 MAGEA5P43359 124 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 NRG3P56975 720 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 HYAL4Q2M3T9 481 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 SH2D4BQ5SQS7 431 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 CES4AQ5XG92 561 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 DOLPP1Q86YN1 238 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 CLYBLQ8N0X4 340 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 AGR3Q8TD06 166 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 ITLN2Q8WWU7 325 aaPredicted RBP21.1■□□□□ 0.97
LSM4-201ENST00000252816 PKNOX2Q96KN3 472 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 PHF12Q96QT6 1004 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 BBS4Q96RK4 519 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 EML4Q9HC35 981 aaKnown RBP21.1■□□□□ 0.97
LSM4-201ENST00000252816 TAS2R7Q9NYW3 318 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 SUCOQ9UBS9 1254 aaKnown RBP21.1■□□□□ 0.97
LSM4-201ENST00000252816 LIPGQ9Y5X9 500 aa21.1■□□□□ 0.97
LSM4-201ENST00000252816 PCNX1Q96RV3 2341 aa21.09■□□□□ 0.97
LSM4-201ENST00000252816 LRRC3CA6NJW4 275 aa21.09■□□□□ 0.97
LSM4-201ENST00000252816 CAPN14A8MX76 684 aa21.09■□□□□ 0.97
LSM4-201ENST00000252816 LSM1O15116 133 aaKnown RBP21.09■□□□□ 0.97
LSM4-201ENST00000252816 CELA3AP09093 270 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms