RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SIMC1Q8NDZ2 872 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 ADAMTS18Q8TE60 1221 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 DOK4Q8TEW6 326 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 TMBIM1Q969X1 311 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 ZNF501Q96CX3 271 aaPredicted RBP15.81■□□□□ 0.12
CLN3-252ENST00000636907 LOXL4Q96JB6 756 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 DOHHQ9BU89 302 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 C9orf16Q9BUW7 83 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 SYNDIG1Q9H7V2 258 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 DDX18Q9NVP1 670 aaKnown RBP15.81■□□□□ 0.12
CLN3-252ENST00000636907 PDP2Q9P2J9 529 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 P2RX2Q9UBL9 471 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 LRCH1Q9Y2L9 728 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 R4GN57 208 aa15.81■□□□□ 0.12
CLN3-252ENST00000636907 FAM86C2PA6NEL3 165 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 TGFBR3LH3BV60 316 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 CDC123O75794 336 aaPredicted RBP15.8■□□□□ 0.12
CLN3-252ENST00000636907 RPSAP08865 295 aaKnown RBP15.8■□□□□ 0.12
CLN3-252ENST00000636907 ANKRD34CP0C6C1 535 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 NT5EP21589 574 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 PPP2R1BP30154 601 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 ANXA11P50995 505 aaKnown RBP15.8■□□□□ 0.12
CLN3-252ENST00000636907 CLCN2P51788 898 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 VLDLRP98155 873 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 FHL5Q5TD97 284 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 TLDC1Q6P9B6 456 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 PRR23CQ6ZRP0 262 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 ARHGAP22Q7Z5H3 698 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 ZNF595Q8IYB9 648 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 GPR135Q8IZ08 494 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 OR2L13Q8N349 312 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 OR4D9Q8NGE8 314 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 OR51Q1Q8NH59 317 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 BTBD9Q96Q07 612 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 OR7D2Q96RA2 312 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 FGF21Q9NSA1 209 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 PTGFRNQ9P2B2 879 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 RAB23Q9ULC3 237 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 ABCG2Q9UNQ0 655 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 MRPS33Q9Y291 106 aaKnown RBP15.8■□□□□ 0.12
CLN3-252ENST00000636907 KCNE3Q9Y6H6 103 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 MAU2Q9Y6X3 613 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 TTC28Q96AY4 2481 aa15.8■□□□□ 0.12
CLN3-252ENST00000636907 IGHV5-10-1A0A0J9YXX1 117 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 BLACEA4D250 179 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 C7orf72A4D263 438 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 TMEM247A6NEH6 219 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 hCG_2039718K7EN88 272 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 KHNYNO15037 678 aaKnown RBP15.79■□□□□ 0.12
CLN3-252ENST00000636907 SLC28A2O43868 658 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 PGM3O95394 542 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 FABP3P05413 133 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 SLC35E2P0CK97 266 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 UQCRBP14927 111 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 ZNF23P17027 643 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 ALAS2P22557 587 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 MAN2A2P49641 1150 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 MGAT2Q10469 447 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 FUT5Q11128 374 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 SLC13A2Q13183 592 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 PRICKLE4Q2TBC4 344 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 TRMT12Q53H54 448 aaKnown RBP15.79■□□□□ 0.12
CLN3-252ENST00000636907 LGI4Q8N135 537 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 SMYD1Q8NB12 490 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 RCBTB1Q8NDN9 531 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 ZNF597Q96LX8 424 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 MS4A4EQ96PG1 132 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 ACTRT3Q9BYD9 372 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 PRTFDC1Q9NRG1 225 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 MAT2BQ9NZL9 334 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 DHCR7Q9UBM7 475 aaKnown RBP15.79■□□□□ 0.12
CLN3-252ENST00000636907 NDOR1Q9UHB4 597 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 ZNF639Q9UID6 485 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 SERTAD3Q9UJW9 196 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 PCDHGA5Q9Y5G8 931 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 VPS13AQ96RL7 3174 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 H0YJX3 145 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 GNGT2O14610 69 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 CTNSO60931 367 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 RASAL1O95294 804 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 IFNA14P01570 189 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 ATXN8OSP0DMR3 200 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 NR2F1P10589 423 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 XCR1P46094 333 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 OR1D4P47884 311 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 DUSP3P51452 185 aaPredicted RBP15.79■□□□□ 0.12
CLN3-252ENST00000636907 IST1P53990 364 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 MFSD12Q6NUT3 480 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 DGAT2L6Q6ZPD8 337 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 OLIG3Q7RTU3 272 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 PIWIL3Q7Z3Z3 882 aaKnown RBP15.79■□□□□ 0.12
CLN3-252ENST00000636907 WDR53Q7Z5U6 358 aaPredicted RBP15.79■□□□□ 0.12
CLN3-252ENST00000636907 METTL25Q8N6Q8 603 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 PACRGLQ8N7B6 248 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 ZNF675Q8TD23 568 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.79■□□□□ 0.12
CLN3-252ENST00000636907 MVB12AQ96EY5 273 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 CCDC74BQ96LY2 380 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 NDC1Q9BTX1 674 aa15.79■□□□□ 0.12
CLN3-252ENST00000636907 RUBCNLQ9H714 662 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms