RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 SCO2O43819 266 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 POP4O95707 220 aaKnown RBP10.49□□□□□ -0.73
CLN3-244ENST00000636147 CKBP12277 381 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 ASAH1Q13510 395 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 DSG2Q14126 1118 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 ANKK1Q8NFD2 765 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 OR8J2Q8NGG1 315 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 OR5D16Q8NGK9 328 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 AUTS2Q8WXX7 1259 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 F2RL3Q96RI0 385 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 MCCC1Q96RQ3 725 aaPredicted RBP10.49□□□□□ -0.73
CLN3-244ENST00000636147 BTBD1Q9H0C5 482 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 OR51J1Q9H342 316 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 NARFLQ9H6Q4 476 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 OR6C2Q9NZP2 312 aa10.49□□□□□ -0.73
CLN3-244ENST00000636147 ZNF840PA6NDX5 716 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 FAM86C2PA6NEL3 165 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 C1QBP02746 253 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 H2AFB2P0C5Z0 115 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 NUP62P37198 522 aaPredicted RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 MAGEA11P43364 429 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 TOR2AQ5JU69 321 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 DCAF4L2Q8NA75 395 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 C1orf216Q8TAB5 229 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 C16orf78Q8WTQ4 265 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 MYLIPQ8WY64 445 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 AIF1LQ9BQI0 150 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 IFT27Q9BW83 186 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 GABARAPL3Q9BY60 117 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 SAV1Q9H4B6 383 aaPredicted RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 EGLN3Q9H6Z9 239 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 STARD7Q9NQZ5 370 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 MRPL17Q9NRX2 175 aaKnown RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 SLC23A1Q9UHI7 598 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 GABRQQ9UN88 632 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 IGLV3-10A0A075B6K4 115 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 IQCMA0A1B0GVH7 501 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 TRIM64BA6NI03 449 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 UNCXA6NJT0 531 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 B4GALT3O60512 393 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 GATBO75879 557 aaKnown RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 OAZ2O95190 189 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 TP53P04637 393 aaPredicted RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 IL1RNP18510 177 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 GJA5P36382 358 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 RFX2P48378 723 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 WDR5P61964 334 aaKnown RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 TBPL1P62380 186 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 DBPQ10586 325 aaPredicted RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 CCSMST1Q4G0I0 132 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 ZNF311Q5JNZ3 666 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 CREB3L2Q70SY1 520 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 DNAJB7Q7Z6W7 309 aaPredicted RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 PCSK9Q8NBP7 692 aaKnown RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 OR8K5Q8NH50 307 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 ASB11Q8WXH4 323 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 FAM46AQ96IP4 442 aaKnown RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 C7orf34Q96L11 122 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 DHRS9Q9BPW9 319 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 FAIM2Q9BWQ8 316 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 SMG9Q9H0W8 520 aaKnown RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 OR10A4Q9H209 315 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 NIPAL2Q9H841 368 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 THSD1Q9NS62 852 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 STOX2Q9P2F5 926 aaPredicted RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 TAC3Q9UHF0 121 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 NEU3Q9UQ49 428 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 EXOSC1Q9Y3B2 195 aaKnown RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 CCDC88CQ9P219 2028 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 FAM25EA8MYX2 175 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 ERVH48-1M5A8F1 160 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 PRKYO43930 277 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 SLC22A5O76082 557 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 WISP3O95389 354 aaPredicted RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 PKLRP30613 574 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 RPL4P36578 427 aaKnown RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 ETV5P41161 510 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 SLC11A1P49279 550 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 ETV1P50549 477 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 PODNL1Q6PEZ8 512 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 LILRA3Q8N6C8 439 aaPredicted RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 FAM98AQ8NCA5 519 aaKnown RBP10.48□□□□□ -0.73
CLN3-244ENST00000636147 DOK4Q8TEW6 326 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 CREB3L4Q8TEY5 395 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 SNX33Q8WV41 574 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 SLC25A46Q96AG3 418 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 ELMOD3Q96FG2 381 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 CDCA4Q9BXL8 241 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 SLC6A16Q9GZN6 736 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 RDH14Q9HBH5 336 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 KLHL21Q9UJP4 597 aa10.48□□□□□ -0.73
CLN3-244ENST00000636147 A0A0G2JMP0 313 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 A0A0X1KG70 313 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 ATP6V1G2-DDX39BF2Z307 99 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 QSOX1O00391 747 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 GPR37L1O60883 481 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 PROS1P07225 676 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 CD9P21926 228 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 UQCRC2P22695 453 aa10.47□□□□□ -0.73
CLN3-244ENST00000636147 PYCR1P32322 319 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms