RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 HAO1Q9UJM8 370 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 CFL2Q9Y281 166 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 C2orf92A0A1B0GVN3 265 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 PYCARD-AS1I3L0S3 204 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 PIGGQ5H8A4 983 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 HLA-DQA1Q5Y7H0 255 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 OPN5Q6U736 354 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 ADCY4Q8NFM4 1077 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 DNAJB8Q8NHS0 232 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 SLC22A8Q8TCC7 542 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 FAR1Q8WVX9 515 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 EGLN2Q96KS0 407 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 C3orf30Q96M34 536 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 BARD1Q99728 777 aaKnown RBP19.19■□□□□ 0.66
CLN3-240ENST00000631023 SH3GL2Q99962 352 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 WWTR1Q9GZV5 400 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 THAP1Q9NVV9 213 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 MAT2BQ9NZL9 334 aa19.19■□□□□ 0.66
CLN3-240ENST00000631023 HMGB1P1B2RPK0 211 aaPredicted RBP19.18■□□□□ 0.66
CLN3-240ENST00000631023 BCAS2O75934 225 aaPredicted RBP19.18■□□□□ 0.66
CLN3-240ENST00000631023 CRYABP02511 175 aaKnown RBP19.18■□□□□ 0.66
CLN3-240ENST00000631023 SDC1P18827 310 aa19.18■□□□□ 0.66
CLN3-240ENST00000631023 TACR1P25103 407 aa19.18■□□□□ 0.66
CLN3-240ENST00000631023 CEBPEQ15744 281 aa19.18■□□□□ 0.66
CLN3-240ENST00000631023 C6orf136Q5SQH8 315 aa19.18■□□□□ 0.66
CLN3-240ENST00000631023 FAM111BQ6SJ93 734 aa19.18■□□□□ 0.66
CLN3-240ENST00000631023 IL20RBQ6UXL0 311 aa19.18■□□□□ 0.66
CLN3-240ENST00000631023 ZNF675Q8TD23 568 aa19.18■□□□□ 0.66
CLN3-240ENST00000631023 CTHRC1Q96CG8 243 aa19.18■□□□□ 0.66
CLN3-240ENST00000631023 ERP27Q96DN0 273 aa19.18■□□□□ 0.66
CLN3-240ENST00000631023 TSSK3Q96PN8 268 aa19.18■□□□□ 0.66
CLN3-240ENST00000631023 MANSC1Q9H8J5 431 aa19.18■□□□□ 0.66
CLN3-240ENST00000631023 TIMMDC1Q9NPL8 285 aa19.18■□□□□ 0.66
CLN3-240ENST00000631023 BCAP29Q9UHQ4 241 aa19.18■□□□□ 0.66
CLN3-240ENST00000631023 NTNG1Q9Y2I2 539 aa19.18■□□□□ 0.66
CLN3-240ENST00000631023 SPENQ96T58 3664 aaKnown RBP19.17■□□□□ 0.66
CLN3-240ENST00000631023 NME2P1O60361 137 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 CLPSP04118 112 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 BCKDHAP12694 445 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 DDX5P17844 614 aaKnown RBP19.17■□□□□ 0.66
CLN3-240ENST00000631023 S1PR1P21453 382 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 NME2P22392 152 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 NTSP30990 170 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 SOX3P41225 446 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 KCNC4Q03721 635 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 DUSP2Q05923 314 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 MGAT2Q10469 447 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 MAD2L1Q13257 205 aaPredicted RBP19.17■□□□□ 0.66
CLN3-240ENST00000631023 EBPQ15125 230 aaKnown RBP19.17■□□□□ 0.66
CLN3-240ENST00000631023 PDCD2Q16342 344 aaPredicted RBP19.17■□□□□ 0.66
CLN3-240ENST00000631023 GALNTL5Q7Z4T8 443 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 FAM9CQ8IZT9 166 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 TAGAPQ8N103 731 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 ZNF615Q8N8J6 731 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 FNDC5Q8NAU1 212 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 TP53INP1Q96A56 240 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 SGCZQ96LD1 299 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 REEP4Q9H6H4 257 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 BAIAP2L1Q9UHR4 511 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 ZNF639Q9UID6 485 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 KLF13Q9Y2Y9 288 aaPredicted RBP19.17■□□□□ 0.66
CLN3-240ENST00000631023 GTF3C1Q12789 2109 aa19.17■□□□□ 0.66
CLN3-240ENST00000631023 MYO1GB0I1T2 1018 aa19.16■□□□□ 0.66
CLN3-240ENST00000631023 OR6B1O95007 311 aa19.16■□□□□ 0.66
CLN3-240ENST00000631023 PRPS2P11908 318 aa19.16■□□□□ 0.66
CLN3-240ENST00000631023 TTMPQ5BVD1 217 aa19.16■□□□□ 0.66
CLN3-240ENST00000631023 ZNF227Q86WZ6 799 aa19.16■□□□□ 0.66
CLN3-240ENST00000631023 DND1Q8IYX4 353 aaKnown RBP19.16■□□□□ 0.66
CLN3-240ENST00000631023 OR9A2Q8NGT5 310 aa19.16■□□□□ 0.66
CLN3-240ENST00000631023 GFM2Q969S9 779 aaKnown RBP19.16■□□□□ 0.66
CLN3-240ENST00000631023 ZNF764Q96H86 408 aaPredicted RBP19.16■□□□□ 0.66
CLN3-240ENST00000631023 TAAR6Q96RI8 345 aa19.16■□□□□ 0.66
CLN3-240ENST00000631023 HES7Q9BYE0 225 aa19.16■□□□□ 0.66
CLN3-240ENST00000631023 ACBD3Q9H3P7 528 aa19.16■□□□□ 0.66
CLN3-240ENST00000631023 OLAHQ9NV23 265 aa19.16■□□□□ 0.66
CLN3-240ENST00000631023 PRODH2Q9UF12 536 aa19.16■□□□□ 0.66
CLN3-240ENST00000631023 EXO1Q9UQ84 846 aaKnown RBP19.16■□□□□ 0.66
CLN3-240ENST00000631023 EIF3LQ9Y262 564 aaKnown RBP19.16■□□□□ 0.66
CLN3-240ENST00000631023 EXPH5Q8NEV8 1989 aa19.16■□□□□ 0.66
CLN3-240ENST00000631023 POLEQ07864 2286 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 KLRC4-KLRK1H3BQV0 150 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 AKAP10O43572 662 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 SLITRK5O94991 958 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 RPL3P39023 403 aaKnown RBP19.15■□□□□ 0.66
CLN3-240ENST00000631023 LTB4RQ15722 352 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 SMU1Q2TAY7 513 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 TRMT12Q53H54 448 aaKnown RBP19.15■□□□□ 0.66
CLN3-240ENST00000631023 ZNF628Q5EBL2 1059 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 RTL4Q6ZR62 310 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 R3HCC1LQ7Z5L2 792 aaKnown RBP19.15■□□□□ 0.66
CLN3-240ENST00000631023 C17orf47Q8NEP4 570 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 C16orf52Q8NHV5 167 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 PPCDCQ96CD2 204 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 MTERF3Q96E29 417 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 GIMAP2Q9UG22 337 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 CAPN14A8MX76 684 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 TCP11X1B4DZS4 312 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 TBX19O60806 448 aa19.15■□□□□ 0.66
CLN3-240ENST00000631023 SNNO75324 88 aaPredicted RBP19.15■□□□□ 0.66
CLN3-240ENST00000631023 LRATO95237 230 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms