RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 FAM234BA2RU67 622 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 FAM227AF5H4B4 570 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 EEDO75530 441 aaKnown RBP11.79□□□□□ -0.52
PNKP-217ENST00000625216 SLC22A3O75751 556 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 ATP5HO75947 161 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 MYO1DO94832 1006 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 GBAP04062 536 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 SNRPB2P08579 225 aaKnown RBP11.79□□□□□ -0.52
PNKP-217ENST00000625216 TPP2P29144 1249 aaPredicted RBP11.79□□□□□ -0.52
PNKP-217ENST00000625216 RAP1GDS1P52306 607 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 MTTPP55157 894 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 RAB38P57729 211 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 BTG2P78543 158 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 RUNX2Q13950 521 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 TMEM35AQ53FP2 167 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 ABHD17CQ6PCB6 329 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 BLOC1S3Q6QNY0 202 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 ZNF793Q6ZN11 406 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 ASRGL1Q7L266 308 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 RETREG3Q86VR2 466 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 RPS19BP1Q86WX3 136 aaKnown RBP11.79□□□□□ -0.52
PNKP-217ENST00000625216 ZNF595Q8IYB9 648 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 KIF2BQ8N4N8 673 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 RBM15BQ8NDT2 890 aaKnown RBP11.79□□□□□ -0.52
PNKP-217ENST00000625216 CDC26Q8NHZ8 85 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 NR4A3Q92570 626 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 C5orf34Q96MH7 638 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 KCNC2Q96PR1 638 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 TAAR6Q96RI8 345 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 NPAS2Q99743 824 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 TBCDQ9BTW9 1192 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 DPY30Q9C005 99 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 LRMDAQ9H2I8 198 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 MCM8Q9UJA3 840 aa11.79□□□□□ -0.52
PNKP-217ENST00000625216 SPTAN1Q13813 2472 aaKnown RBP11.79□□□□□ -0.52
PNKP-217ENST00000625216 SAGE2PA6NJ88 616 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 B2RBV5 119 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 HNRNPCL1O60812 293 aaKnown RBP11.78□□□□□ -0.52
PNKP-217ENST00000625216 LRATO95237 230 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 F10P00742 488 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 LDLRP01130 860 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 KLK1P06870 262 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 ANXA4P09525 319 aaPredicted RBP11.78□□□□□ -0.52
PNKP-217ENST00000625216 MAOAP21397 527 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 CPOXP36551 454 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 CD96P40200 585 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 POLR2JP52435 117 aaKnown RBP11.78□□□□□ -0.52
PNKP-217ENST00000625216 PLA2G16P53816 162 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 CLDN8P56748 225 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 ZNF763Q0D2J5 394 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 TUBA3CQ13748 450 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 TIGD2Q4W5G0 525 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 C4orf17Q53FE4 359 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 ZNF766Q5HY98 468 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 FCRLBQ6BAA4 426 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 TUBA3EQ6PEY2 450 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 SCUBE1Q8IWY4 988 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 RIMKLAQ8IXN7 391 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 BEST3Q8N1M1 668 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 ARMC10Q8N2F6 343 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 AMER2Q8N7J2 671 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 NFAM1Q8NET5 270 aaPredicted RBP11.78□□□□□ -0.52
PNKP-217ENST00000625216 C16orf78Q8WTQ4 265 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 RGMAQ96B86 450 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 SPDL1Q96EA4 605 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 COPS7BQ9H9Q2 264 aaPredicted RBP11.78□□□□□ -0.52
PNKP-217ENST00000625216 NECTIN3Q9NQS3 549 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 PRTFDC1Q9NRG1 225 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 TMEM45AQ9NWC5 275 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 TAS2R1Q9NYW7 299 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 PLEKHB1Q9UF11 243 aaPredicted RBP11.78□□□□□ -0.52
PNKP-217ENST00000625216 ERRFI1Q9UJM3 462 aaPredicted RBP11.78□□□□□ -0.52
PNKP-217ENST00000625216 DAPP1Q9UN19 280 aa11.78□□□□□ -0.52
PNKP-217ENST00000625216 EXO1Q9UQ84 846 aaKnown RBP11.78□□□□□ -0.52
PNKP-217ENST00000625216 A0A0A6YYD5 115 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 A0A1B0GUH1 482 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 GABRR3A8MPY1 467 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 BBIP1A8MTZ0 92 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 MRASO14807 208 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 AIM2O14862 343 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 AKAP10O43572 662 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 TMPRSS11DO60235 418 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 CTNSO60931 367 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 DNAJC8O75937 253 aaPredicted RBP11.77□□□□□ -0.53
PNKP-217ENST00000625216 STSP08842 583 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 CD46P15529 392 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 SSR2P43308 183 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 NUDT2P50583 147 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 DGKQP52824 942 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 LIM2P55344 173 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 PER3P56645 1201 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 KCNK10P57789 538 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 C21orf58P58505 322 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 SLC25A3Q00325 362 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.77□□□□□ -0.53
PNKP-217ENST00000625216 VPS26BQ4G0F5 336 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 SPANXN4Q5MJ08 99 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 NUDT13Q86X67 352 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 TMEM178AQ8NBL3 297 aa11.77□□□□□ -0.53
PNKP-217ENST00000625216 MDS2Q8NDY4 140 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms