RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 CRB3Q9BUF7 120 aa11.86□□□□□ -0.51
UPF1-208ENST00000600012 EFCAB1Q9HAE3 211 aa11.86□□□□□ -0.51
UPF1-208ENST00000600012 IL1RL2Q9HB29 575 aa11.86□□□□□ -0.51
UPF1-208ENST00000600012 ANKHQ9HCJ1 492 aa11.86□□□□□ -0.51
UPF1-208ENST00000600012 MIEF1Q9NQG6 463 aa11.86□□□□□ -0.51
UPF1-208ENST00000600012 LYARQ9NX58 379 aaKnown RBP11.86□□□□□ -0.51
UPF1-208ENST00000600012 ATP6V1HQ9UI12 483 aa11.86□□□□□ -0.51
UPF1-208ENST00000600012 OSGIN2Q9Y236 505 aa11.86□□□□□ -0.51
UPF1-208ENST00000600012 ASB4Q9Y574 426 aa11.86□□□□□ -0.51
UPF1-208ENST00000600012 SLC22A7Q9Y694 548 aa11.86□□□□□ -0.51
UPF1-208ENST00000600012 MYO7BQ6PIF6 2116 aa11.86□□□□□ -0.51
UPF1-208ENST00000600012 A0A088AWK7 358 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 A0A0A6YYC8 382 aaPredicted RBP11.85□□□□□ -0.51
UPF1-208ENST00000600012 DYTNA2CJ06 578 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 VSTM2BA6NLU5 285 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 GABRR3A8MPY1 467 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 I3L1I5 382 aaPredicted RBP11.85□□□□□ -0.51
UPF1-208ENST00000600012 SGK494L7N484 410 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 LRRTM2O43300 516 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 GALR3O60755 368 aaPredicted RBP11.85□□□□□ -0.51
UPF1-208ENST00000600012 RDH16O75452 317 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 AIFM1O95831 613 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 HPP00738 406 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 IL6P05231 212 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 LAMP1P11279 417 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 PCSK2P16519 638 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 ZNF10P21506 573 aaPredicted RBP11.85□□□□□ -0.51
UPF1-208ENST00000600012 RPL3P39023 403 aaKnown RBP11.85□□□□□ -0.51
UPF1-208ENST00000600012 KIR3DL1P43629 444 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 OR1D4P47884 311 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 RASSF2P50749 326 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 WNT3P56703 355 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 TRA2BP62995 288 aaKnown RBP11.85□□□□□ -0.51
UPF1-208ENST00000600012 KCNJ2P63252 427 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 OCA2Q04671 838 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 SRSF11Q05519 484 aaKnown RBP11.85□□□□□ -0.51
UPF1-208ENST00000600012 MFAP5Q13361 173 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 ART3Q13508 389 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 NDUFA9Q16795 377 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 DPY19L1Q2PZI1 675 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 CPTPQ5TA50 214 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 C18orf63Q68DL7 685 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 DNAJC14Q6Y2X3 702 aaPredicted RBP11.85□□□□□ -0.51
UPF1-208ENST00000600012 R3HCC1LQ7Z5L2 792 aaKnown RBP11.85□□□□□ -0.51
UPF1-208ENST00000600012 DHDDSQ86SQ9 333 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 GPR180Q86V85 440 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 SHISA5Q8N114 240 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 PPCDCQ96CD2 204 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 OR52E6Q96RD3 313 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 LMF1Q96S06 567 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 CSF3RQ99062 836 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 SLX1AQ9BQ83 275 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 DUSP26Q9BV47 211 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 SH3BP4Q9P0V3 963 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 MAPRE3Q9UPY8 281 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 ATG4BQ9Y4P1 393 aa11.85□□□□□ -0.51
UPF1-208ENST00000600012 A0A1B0GUH1 482 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 A0A1W2PR48 441 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 GLOD5A6NK44 160 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 HNRNPRO43390 633 aaKnown RBP11.84□□□□□ -0.51
UPF1-208ENST00000600012 FOXS1O43638 330 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 DNAJC8O75937 253 aaPredicted RBP11.84□□□□□ -0.51
UPF1-208ENST00000600012 NR2F6P10588 404 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 DDCP20711 480 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 CPN2P22792 545 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 GSTM5P46439 218 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 LIM2P55344 173 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 TNFRSF17Q02223 184 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 Q0VFX4 171 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 NFYCQ13952 458 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 CAPRIN1Q14444 709 aaKnown RBP11.84□□□□□ -0.51
UPF1-208ENST00000600012 HEPACAMQ14CZ8 416 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 MAPKAPK3Q16644 382 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 MPEG1Q2M385 716 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 COQ5Q5HYK3 327 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 C6orf10Q5SRN2 563 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 NDUFAF5Q5TEU4 345 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 GARNL3Q5VVW2 1013 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 RPUSD3Q6P087 351 aaKnown RBP11.84□□□□□ -0.51
UPF1-208ENST00000600012 FAM180BQ6P0A1 224 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 PRMT9Q6P2P2 845 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 C16orf89Q6UX73 402 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 LINC00696Q6ZRV3 163 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 CAMKMTQ7Z624 323 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 DEFB107AQ8IZN7 70 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 CLECL1Q8IZS7 167 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 CA13Q8N1Q1 262 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 BCORP1Q8N888 145 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 FAM47BQ8NA70 645 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 PCYOX1LQ8NBM8 494 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 OR8J2Q8NGG1 315 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 STT3BQ8TCJ2 826 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 CIDECQ96AQ7 238 aaPredicted RBP11.84□□□□□ -0.51
UPF1-208ENST00000600012 MIEF2Q96C03 454 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 COQ8BQ96D53 544 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 MTERF3Q96E29 417 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 SLC39A3Q9BRY0 314 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 INPP5KQ9BT40 448 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 FAIM2Q9BWQ8 316 aa11.84□□□□□ -0.51
UPF1-208ENST00000600012 CADM1Q9BY67 442 aaKnown RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms