RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 SEMA3GQ9NS98 782 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 POT1Q9NUX5 634 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 BLOC1S6Q9UL45 172 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 RNF6Q9Y252 685 aa13.62□□□□□ -0.23
VRK3-217ENST00000599538 A0A1W2PPC4 97 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 ANXA8P13928 327 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 MPIP34949 423 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 SOX18P35713 384 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 MAP2K4P45985 399 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 ID2Q02363 134 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 TDGQ13569 410 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 ZNF770Q6IQ21 691 aaPredicted RBP13.61□□□□□ -0.23
VRK3-217ENST00000599538 FAM111BQ6SJ93 734 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 CCDC103Q8IW40 242 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 AQP11Q8NBQ7 271 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 RSC1A1Q92681 617 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 ZNF354BQ96LW1 612 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 DOK1Q99704 481 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 DUSP21Q9H596 190 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 SLC2A4RGQ9NR83 387 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 STARD5Q9NSY2 213 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 HSPE1-MOB4S4R3N1 261 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 VCANP13611 3396 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 IGHV1OR15-9A0A0B4J2B8 117 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 A0A1W2PPW3 197 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 CCNB2O95067 398 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 FHP07954 510 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 JUNDP17535 347 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 CBLP22681 906 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 NR4A1P22736 598 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 CPN2P22792 545 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 MAOBP27338 520 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 MASP1P48740 699 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 KHKP50053 298 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 RPS6KA3P51812 740 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 GP2P55259 537 aaKnown RBP13.61□□□□□ -0.23
VRK3-217ENST00000599538 LSM11P83369 360 aaKnown RBP eCLIP13.61□□□□□ -0.23
VRK3-217ENST00000599538 TNFRSF17Q02223 184 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 FZD5Q13467 585 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 NPTX1Q15818 432 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 LEXMQ3ZCV2 418 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 FGD3Q5JSP0 725 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 C6orf132Q5T0Z8 1188 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 TMEM236Q5W0B7 351 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 ABCA7Q8IZY2 2146 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 FAM46DQ8NEK8 389 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 NUP43Q8NFH3 380 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 OR7G2Q8NG99 324 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 OR5T3Q8NGG3 340 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 BAHD1Q8TBE0 780 aaPredicted RBP13.61□□□□□ -0.23
VRK3-217ENST00000599538 OR7D2Q96RA2 312 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 ZNF607Q96SK3 696 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 ZFYVE21Q9BQ24 234 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 TUBA1CQ9BQE3 449 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 AMBNQ9NP70 447 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 LYARQ9NX58 379 aaKnown RBP13.61□□□□□ -0.23
VRK3-217ENST00000599538 ZSCAN32Q9NX65 697 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 DAPP1Q9UN19 280 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 HCN4Q9Y3Q4 1203 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 PCDHGA10Q9Y5H3 936 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 ZNF780BQ9Y6R6 833 aa13.61□□□□□ -0.23
VRK3-217ENST00000599538 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 C2orf74A8MZ97 194 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 PDE9AO76083 593 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 WNT1P04628 370 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 CTSEP14091 401 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 TTKP33981 857 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 GGT2P36268 569 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 IDH2P48735 452 aaKnown RBP13.6□□□□□ -0.23
VRK3-217ENST00000599538 MAN2A2P49641 1150 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 TGM3Q08188 693 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 PIN1Q13526 163 aaPredicted RBP13.6□□□□□ -0.23
VRK3-217ENST00000599538 KLHL17Q6TDP4 642 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 ALDH16A1Q8IZ83 802 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 ZNF540Q8NDQ6 660 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 TMEM52Q8NDY8 209 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 TSTD1Q8NFU3 115 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 FAM81AQ8TBF8 368 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 SFXN5Q8TD22 340 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 FAR1Q8WVX9 515 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 MUL1Q969V5 352 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 GIMAP5Q96F15 307 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 LRRC61Q9BV99 259 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 FAM60AQ9NP50 221 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 POFUT2Q9Y2G5 429 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 B4DGG1 531 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 EMC8O43402 210 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 FOXD2O60548 495 aaPredicted RBP13.6□□□□□ -0.23
VRK3-217ENST00000599538 TPST2O60704 377 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 ZIC2O95409 532 aaPredicted RBP13.6□□□□□ -0.23
VRK3-217ENST00000599538 ZBTB11O95625 1053 aaPredicted RBP13.6□□□□□ -0.23
VRK3-217ENST00000599538 MT-ND2P03891 347 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 IGFBP1P08833 259 aaPredicted RBP13.6□□□□□ -0.23
VRK3-217ENST00000599538 XKP51811 444 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 CRISP3P54108 245 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 HHEXQ03014 270 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 SUZ12Q15022 739 aaKnown RBP13.6□□□□□ -0.23
VRK3-217ENST00000599538 DEFB110Q30KQ9 67 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 PROX2Q3B8N5 592 aa13.6□□□□□ -0.23
VRK3-217ENST00000599538 GPAT3Q53EU6 434 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms