RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PIGGQ5H8A4 983 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 TMEM64Q6YI46 380 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 ZNF551Q7Z340 670 aaPredicted RBP13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 PRICKLE2Q7Z3G6 844 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 HOMEZQ8IX15 550 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 VWA5B2Q8N398 1253 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 CISD2Q8N5K1 135 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 OR7G2Q8NG99 324 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 TM9SF4Q92544 642 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 ADIPOR1Q96A54 375 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 AMDHD1Q96NU7 426 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 WWTR1Q9GZV5 400 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 OR10A5Q9H207 317 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 TRIM45Q9H8W5 580 aaPredicted RBP13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 MIEF1Q9NQG6 463 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 PFDN4Q9NQP4 134 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 ASIC5Q9NY37 505 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 ATP6V1HQ9UI12 483 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 DYTNA2CJ06 578 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 ANKRD28O15084 1053 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 LAMP1P11279 417 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 PRPS2P11908 318 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 SOX3P41225 446 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 FRKP42685 505 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 EMDP50402 254 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 HLCSP50747 726 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 NCBP2P52298 156 aaKnown RBP eCLIP13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 TLR1Q15399 786 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 OR1C1Q15619 314 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 INPP5JQ15735 1006 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 IGFBP7Q16270 282 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 SMU1Q2TAY7 513 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 RNF111Q6ZNA4 994 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 FAM47EQ6ZV65 393 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 MDGA2Q7Z553 956 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 OR52R1Q8NGF1 315 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 C16orf52Q8NHV5 167 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 NUBPLQ8TB37 319 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 PIWIL2Q8TC59 973 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 ZNF675Q8TD23 568 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 LRRC8CQ8TDW0 803 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 SNRNP40Q96DI7 357 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 MAELQ96JY0 434 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 ART5Q96L15 291 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 C7orf26Q96N11 449 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 OR52B2Q96RD2 323 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 TAAR6Q96RI8 345 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 BBS4Q96RK4 519 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 UTP23Q9BRU9 249 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 TRIM4Q9C037 500 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 SH3BP4Q9P0V3 963 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 MAP10Q9P2G4 905 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 COPS7AQ9UBW8 275 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 ERVK-11Q9UQG0 969 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 ENTPD4Q9Y227 616 aa13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 YARS2Q9Y2Z4 477 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 HEMK1Q9Y5R4 338 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-217ENST00000598558 TTLL8A6PVC2 850 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 SCAMP2O15127 329 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 DYRK3O43781 588 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 SLC28A2O43868 658 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 PRAMEF2O60811 474 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 LBPP18428 481 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 GPX3P22352 226 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 MAPK1P28482 360 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 MPIP34949 423 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 ASMTP46597 345 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 CLDN8P56748 225 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 PHC1P78364 1004 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 OC90Q02509 493 aaPredicted RBP13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 TLE1Q04724 770 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 TMEM198Q66K66 360 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 IL20RBQ6UXL0 311 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 OR7G1Q8NGA0 311 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 OR5L2Q8NGL0 311 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 DYDC1Q8WWB3 177 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 PPCDCQ96CD2 204 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 COQ8BQ96D53 544 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 ZNF764Q96H86 408 aaPredicted RBP13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 TEX37Q96LM6 180 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 MAGEB18Q96M61 343 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 GAL3ST4Q96RP7 486 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 NXF5Q9H1B4 397 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 ACBD3Q9H3P7 528 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 KLHL1Q9NR64 748 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 LRFN1Q9P244 771 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 BCAP29Q9UHQ4 241 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 EIF3LQ9Y262 564 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 USH1CQ9Y6N9 552 aa13.14□□□□□ -0.31
SHKBP1-217ENST00000598558 TRAV17A0A0B4J275 112 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 C2orf92A0A1B0GVN3 265 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 OR6C76A6NM76 312 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 PDPK1O15530 556 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 ATP8B1O43520 1251 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 PLOD3O60568 738 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 SP1P08047 785 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 PLA2G2AP14555 144 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 IL12AP29459 219 aa13.13□□□□□ -0.31
SHKBP1-217ENST00000598558 MC3RP41968 323 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms