RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 MRPL14Q6P1L8 145 aaKnown RBP23.47■■□□□ 1.35
SHMT1-207ENST00000580002 TNFAIP8L2Q6P589 184 aaPredicted RBP23.47■■□□□ 1.35
SHMT1-207ENST00000580002 QSOX2Q6ZRP7 698 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 PTOV1Q86YD1 416 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 SAMD14Q8IZD0 417 aaPredicted RBP23.47■■□□□ 1.35
SHMT1-207ENST00000580002 HORMAD2Q8N7B1 307 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 NUP43Q8NFH3 380 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 SPSB2Q99619 263 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 CXorf21Q9HAI6 301 aa23.47■■□□□ 1.35
SHMT1-207ENST00000580002 GIMAP1-GIMAP5A0A087WTJ2 511 aa23.46■■□□□ 1.35
SHMT1-207ENST00000580002 BLACEA4D250 179 aa23.46■■□□□ 1.35
SHMT1-207ENST00000580002 VSTM2BA6NLU5 285 aa23.46■■□□□ 1.35
SHMT1-207ENST00000580002 S1PR1P21453 382 aa23.46■■□□□ 1.35
SHMT1-207ENST00000580002 STT3AP46977 705 aa23.46■■□□□ 1.35
SHMT1-207ENST00000580002 FAM198BQ6UWH4 519 aa23.46■■□□□ 1.35
SHMT1-207ENST00000580002 ST13P4Q8IZP2 240 aaPredicted RBP23.46■■□□□ 1.35
SHMT1-207ENST00000580002 OR52N2Q8NGI0 321 aa23.46■■□□□ 1.35
SHMT1-207ENST00000580002 OR5D16Q8NGK9 328 aa23.46■■□□□ 1.35
SHMT1-207ENST00000580002 RAB8BQ92930 207 aa23.46■■□□□ 1.35
SHMT1-207ENST00000580002 GIMAP5Q96F15 307 aa23.46■■□□□ 1.35
SHMT1-207ENST00000580002 RBM18Q96H35 190 aaKnown RBP23.46■■□□□ 1.35
SHMT1-207ENST00000580002 DGAT2Q96PD7 388 aa23.46■■□□□ 1.35
SHMT1-207ENST00000580002 SH3GL1Q99961 368 aa23.46■■□□□ 1.35
SHMT1-207ENST00000580002 DDA1Q9BW61 102 aa23.46■■□□□ 1.35
SHMT1-207ENST00000580002 SEMA3GQ9NS98 782 aa23.46■■□□□ 1.35
SHMT1-207ENST00000580002 MMACHCQ9Y4U1 282 aa23.46■■□□□ 1.35
SHMT1-207ENST00000580002 EMC8O43402 210 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 KLK3P07288 261 aaPredicted RBP23.45■■□□□ 1.34
SHMT1-207ENST00000580002 AGXTP21549 392 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 TRIM25Q14258 630 aaKnown RBP23.45■■□□□ 1.34
SHMT1-207ENST00000580002 NSDHLQ15738 373 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 C1orf146Q5VVC0 180 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 CYP2R1Q6VVX0 501 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 ZNF517Q6ZMY9 492 aaPredicted RBP23.45■■□□□ 1.34
SHMT1-207ENST00000580002 TMPRSS12Q86WS5 348 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 ZNF321PQ8N8H1 164 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 CTHRC1Q96CG8 243 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 LRFN5Q96NI6 719 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 CDV3Q9UKY7 258 aaKnown RBP23.45■■□□□ 1.34
SHMT1-207ENST00000580002 GMEB1Q9Y692 573 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 KCNE3Q9Y6H6 103 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 IGHV3-20A0A0C4DH32 117 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 PLOD2O00469 737 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 ENTPD5O75356 428 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 DLGAP3O95886 979 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 HMGN2P05204 90 aaKnown RBP23.45■■□□□ 1.34
SHMT1-207ENST00000580002 IL10P22301 178 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 SSTR4P31391 388 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 EIF3IQ13347 325 aaKnown RBP23.45■■□□□ 1.34
SHMT1-207ENST00000580002 ZNF267Q14586 743 aaPredicted RBP23.45■■□□□ 1.34
SHMT1-207ENST00000580002 LASP1Q14847 261 aaKnown RBP23.45■■□□□ 1.34
SHMT1-207ENST00000580002 TMEM64Q6YI46 380 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 ZZZ3Q8IYH5 903 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 OR2L13Q8N349 312 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 OR2T12Q8NG77 320 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 PTPMT1Q8WUK0 201 aaPredicted RBP23.45■■□□□ 1.34
SHMT1-207ENST00000580002 RIT1Q92963 219 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 ASPSCR1Q9BZE9 553 aa23.45■■□□□ 1.34
SHMT1-207ENST00000580002 DCHS1Q96JQ0 3298 aa23.44■■□□□ 1.34
SHMT1-207ENST00000580002 TCRBV16S1A1N1A0A5B0 115 aa23.44■■□□□ 1.34
SHMT1-207ENST00000580002 IDSB3KWA1 339 aa23.44■■□□□ 1.34
SHMT1-207ENST00000580002 TNFRSF21O75509 655 aa23.44■■□□□ 1.34
SHMT1-207ENST00000580002 CBX7O95931 251 aa23.44■■□□□ 1.34
SHMT1-207ENST00000580002 PGDP52209 483 aa23.44■■□□□ 1.34
SHMT1-207ENST00000580002 CCNIQ14094 377 aa23.44■■□□□ 1.34
SHMT1-207ENST00000580002 OLIG3Q7RTU3 272 aa23.44■■□□□ 1.34
SHMT1-207ENST00000580002 DDX18Q9NVP1 670 aaKnown RBP23.44■■□□□ 1.34
SHMT1-207ENST00000580002 SUCOQ9UBS9 1254 aaKnown RBP23.44■■□□□ 1.34
SHMT1-207ENST00000580002 PCDHGA3Q9Y5H0 932 aa23.44■■□□□ 1.34
SHMT1-207ENST00000580002 SDK2Q58EX2 2172 aa23.44■■□□□ 1.34
SHMT1-207ENST00000580002 KRT75O95678 551 aa23.43■■□□□ 1.34
SHMT1-207ENST00000580002 TNNI3P19429 210 aa23.43■■□□□ 1.34
SHMT1-207ENST00000580002 ATP6V1B2P21281 511 aa23.43■■□□□ 1.34
SHMT1-207ENST00000580002 CYP51A1Q16850 503 aa23.43■■□□□ 1.34
SHMT1-207ENST00000580002 GALNT12Q8IXK2 581 aa23.43■■□□□ 1.34
SHMT1-207ENST00000580002 PLPP5Q8NEB5 264 aa23.43■■□□□ 1.34
SHMT1-207ENST00000580002 ZNF675Q8TD23 568 aa23.43■■□□□ 1.34
SHMT1-207ENST00000580002 ADAMTS14Q8WXS8 1223 aa23.43■■□□□ 1.34
SHMT1-207ENST00000580002 SLC35G5Q96KT7 338 aa23.43■■□□□ 1.34
SHMT1-207ENST00000580002 OR51I1Q9H343 314 aa23.43■■□□□ 1.34
SHMT1-207ENST00000580002 ADAP2Q9NPF8 381 aa23.43■■□□□ 1.34
SHMT1-207ENST00000580002 C19orf53Q9UNZ5 99 aaPredicted RBP23.43■■□□□ 1.34
SHMT1-207ENST00000580002 NUP210LQ5VU65 1888 aa23.43■■□□□ 1.34
SHMT1-207ENST00000580002 PRAMEF27A3QJZ7 478 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 CIB2O75838 187 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 HEXBP07686 556 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 OR12D1P0DN82 309 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 MATN1P21941 496 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 HTR1EP28566 365 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 MAP4K2Q12851 820 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 C6orf15Q6UXA7 325 aaPredicted RBP23.42■■□□□ 1.34
SHMT1-207ENST00000580002 NET1Q7Z628 596 aaPredicted RBP23.42■■□□□ 1.34
SHMT1-207ENST00000580002 GALNT10Q86SR1 603 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 SFXN5Q8TD22 340 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 ASB9Q96DX5 294 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 ZPBPQ9BS86 351 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 CNPPD1Q9BV87 410 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 SLC26A1Q9H2B4 701 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 C3orf14Q9HBI5 128 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 NTMQ9P121 344 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms