RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 A0A0G2JN53 185 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 SPOPO43791 374 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 B3GALT2O43825 422 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 LDB3O75112 727 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 TMED10P49755 219 aaKnown RBP14.43□□□□□ -0.1
VPS53-218ENST00000575207 LIM2P55344 173 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 CLDN15P56746 228 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 TTLL9Q3SXZ7 439 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 IQCCQ4KMZ1 466 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 TMEM81Q6P7N7 255 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 C7orf57Q8NEG2 295 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 HSD17B8Q92506 261 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 LPGAT1Q92604 370 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 SFXN2Q96NB2 322 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 FOXN4Q96NZ1 517 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 ANP32EQ9BTT0 268 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 DMGDHQ9UI17 866 aaKnown RBP14.43□□□□□ -0.1
VPS53-218ENST00000575207 TCAF1Q9Y4C2 921 aa14.43□□□□□ -0.1
VPS53-218ENST00000575207 ESYT3A0FGR9 886 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 PSTPIP1O43586 416 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 CLCN7P51798 805 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 DVL1P1P54792 670 aaPredicted RBP14.42□□□□□ -0.1
VPS53-218ENST00000575207 STXBP1P61764 594 aaKnown RBP14.42□□□□□ -0.1
VPS53-218ENST00000575207 RCN2Q14257 317 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 GALNT12Q8IXK2 581 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 RCOR2Q8IZ40 523 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 MUC15Q8N387 334 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 OTUD6BQ8N6M0 293 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 WDSUB1Q8N9V3 476 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 RDH11Q8TC12 318 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 KCTD4Q8WVF5 259 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 HPS1Q92902 700 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 SNF8Q96H20 258 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 FAM118BQ9BPY3 351 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 HDHD5Q9BXW7 423 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 SLITRK2Q9H156 845 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 UNKLQ9H9P5 680 aaKnown RBP14.42□□□□□ -0.1
VPS53-218ENST00000575207 MOCS1Q9NZB8 636 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 EMC9Q9Y3B6 208 aa14.42□□□□□ -0.1
VPS53-218ENST00000575207 LOC390937A0A1W2PQ73 354 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 POM121CA8CG34 1229 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 TMEM253P0C7T8 217 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 COMTP21964 271 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 SRD5A2P31213 254 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 RPL22P35268 128 aaKnown RBP14.41□□□□□ -0.1
VPS53-218ENST00000575207 STT3AP46977 705 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 IRF9Q00978 393 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 CUL1Q13616 776 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 DOC2AQ14183 400 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 ZSWIM7Q19AV6 140 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 SLC30A6Q6NXT4 461 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 CASC4Q6P4E1 433 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 MBOAT1Q6ZNC8 495 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 DHRS9Q9BPW9 319 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 PINK1Q9BXM7 581 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 HSD3B7Q9H2F3 369 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 SNX15Q9NRS6 342 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 CRYL1Q9Y2S2 319 aa14.41□□□□□ -0.1
VPS53-218ENST00000575207 MRPS18CQ9Y3D5 142 aaKnown RBP14.41□□□□□ -0.1
VPS53-218ENST00000575207 A0A088AWK7 358 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 UQCRHLA0A096LP55 91 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 IQANK1A0A1B0GTG1 560 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 OR6C76A6NM76 312 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 E7EQL1 145 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 DYRK3O43781 588 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 ZNF189O75820 626 aaPredicted RBP14.4□□□□□ -0.1
VPS53-218ENST00000575207 PEPDP12955 493 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 ENO3P13929 434 aaPredicted RBP14.4□□□□□ -0.1
VPS53-218ENST00000575207 ZNF10P21506 573 aaPredicted RBP14.4□□□□□ -0.1
VPS53-218ENST00000575207 PTGDSP41222 190 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 CDH15P55291 814 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 SLC37A1P57057 533 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 EEFSECP57772 596 aaKnown RBP14.4□□□□□ -0.1
VPS53-218ENST00000575207 IGLV3-21P80748 117 aaPredicted RBP14.4□□□□□ -0.1
VPS53-218ENST00000575207 REEP5Q00765 189 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 ID2Q02363 134 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 SETDB1Q15047 1291 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 PON3Q15166 354 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 FIGNL1Q6PIW4 674 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 DGAT2L6Q6ZPD8 337 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 KATNAL2Q8IYT4 538 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 SVOPLQ8N434 492 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 ZDHHC22Q8N966 263 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 ZNF540Q8NDQ6 660 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 OR8K1Q8NGG5 319 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 GIMAP7Q8NHV1 300 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 FBF1Q8TES7 1133 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 MS4A6EQ96DS6 147 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 OR4K3Q96R72 315 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 BPESC1Q9GZL8 116 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 METTL7AQ9H8H3 244 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 SYBUQ9NX95 663 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 KLHL42Q9P2K6 505 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 IKZF3Q9UKT9 509 aa14.4□□□□□ -0.1
VPS53-218ENST00000575207 LOC100653049A0A140TA62 436 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 SYCE3A1L190 88 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 LRP5LA4QPB2 252 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 ERI3O43414 337 aaKnown RBP14.39□□□□□ -0.11
VPS53-218ENST00000575207 ICOSLGO75144 302 aa14.39□□□□□ -0.11
VPS53-218ENST00000575207 KRT34O76011 436 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms