RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 K7ESM1 405 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 FAAHO00519 579 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 PPM1DO15297 605 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 PAICSP22234 425 aaKnown RBP13.73□□□□□ -0.21
VPS35-210ENST00000568784 NCBP2P52298 156 aaKnown RBP eCLIP13.73□□□□□ -0.21
VPS35-210ENST00000568784 TPGS2Q68CL5 300 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 MTFR2Q6P444 385 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 OR52I1Q8NGK6 324 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 CD99L2Q8TCZ2 262 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 ECHDC3Q96DC8 303 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 THSD1Q9NS62 852 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 CUEDC1Q9NWM3 386 aaPredicted RBP13.73□□□□□ -0.21
VPS35-210ENST00000568784 ALG5Q9Y673 324 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 MAU2Q9Y6X3 613 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 PATJQ8NI35 1801 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 A0A1W2PPK0 400 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 BTN3A3O00478 584 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 LATO43561 262 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 SLCO2B1O94956 709 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 C1orf105O95561 183 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 SOD2P04179 222 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 CPN2P22792 545 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 GIPRP48546 466 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 SMIM11AP58511 58 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 COX10Q12887 443 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 PRSS53Q2L4Q9 553 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 TCTN1Q2MV58 587 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 SAXO2Q658L1 398 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 PROKR2Q8NFJ6 384 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 SETD6Q8TBK2 473 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 TREX2Q9BQ50 279 aaPredicted RBP13.73□□□□□ -0.21
VPS35-210ENST00000568784 TEX12Q9BXU0 123 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 DKK3Q9UBP4 350 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 ZFR2Q9UPR6 939 aaKnown RBP13.73□□□□□ -0.21
VPS35-210ENST00000568784 HYKKA2RU49 373 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 CENPBD1B2RD01 187 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 QSOX1O00391 747 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 IGHA2P01877 340 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 SP3Q02447 781 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 TAP2Q03519 686 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 PGBD2Q6P3X8 592 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 XKRXQ6PP77 449 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 HSDL2Q6YN16 418 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 CCDC116Q8IYX3 515 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 OR51G2Q8NGK0 314 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 UCN3Q969E3 161 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 ARSGQ96EG1 525 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 FAM46AQ96IP4 442 aaKnown RBP13.72□□□□□ -0.21
VPS35-210ENST00000568784 ZFP3Q96NJ6 502 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 SLC46A2Q9BY10 475 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 XKR8Q9H6D3 395 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 SDK1Q7Z5N4 2213 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 HEPACAM2A8MVW5 462 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 INMT-MINDY4F8WBC2 141 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 MMP11P24347 488 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 UQCRC1P31930 480 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 DDOSTP39656 456 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 GPR4P46093 362 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 WNT4P56705 351 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 WDR5P61964 334 aaKnown RBP13.72□□□□□ -0.21
VPS35-210ENST00000568784 GPR19Q15760 415 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 KLBQ86Z14 1044 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 OR5H6Q8NGV6 325 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 CHAC2Q8WUX2 184 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 SMPDL3AQ92484 453 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 C11orf24Q96F05 449 aaPredicted RBP13.72□□□□□ -0.21
VPS35-210ENST00000568784 TMEM175Q9BSA9 504 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 HMX1Q9NP08 348 aaPredicted RBP13.72□□□□□ -0.21
VPS35-210ENST00000568784 STMN3Q9NZ72 180 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 BACE2Q9Y5Z0 518 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 CSNK1G3Q9Y6M4 447 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 VWA8A3KMH1 1905 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 DDX5P17844 614 aaKnown RBP13.72□□□□□ -0.21
VPS35-210ENST00000568784 CD79BP40259 229 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 MTNR1AP48039 350 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 PNLIPRP1P54315 467 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 ZNF750Q32MQ0 723 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 CEP78Q5JTW2 689 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 OR7G1Q8NGA0 311 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 GPR32P1Q8NGA4 272 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 UBE2E3Q969T4 207 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 ZBED6CLQ96FA7 236 aaPredicted RBP13.72□□□□□ -0.21
VPS35-210ENST00000568784 NXF2Q9GZY0 626 aaKnown RBP13.72□□□□□ -0.21
VPS35-210ENST00000568784 SERHL2Q9H4I8 314 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 EXTL2Q9UBQ6 330 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 KIAA0100Q14667 2235 aaKnown RBP13.72□□□□□ -0.21
VPS35-210ENST00000568784 ALPK2Q86TB3 2170 aa13.72□□□□□ -0.21
VPS35-210ENST00000568784 LYRM1O43325 122 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 PI15O43692 258 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 NOS1APO75052 506 aaPredicted RBP13.71□□□□□ -0.21
VPS35-210ENST00000568784 SMSP52788 366 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 METAP1P53582 386 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 GPLD1P80108 840 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 KLHL22Q53GT1 634 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 SYT14P1Q58G82 188 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 FAM71E1Q6IPT2 247 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 OR8H3Q8N146 312 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 TRAM1L1Q8N609 369 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 NANOGP1Q8N7R0 232 aa13.71□□□□□ -0.21
VPS35-210ENST00000568784 DNAJC5GQ8N7S2 189 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms