RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 GGTA1PQ4G0N0 100 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 CCNYL2Q5T2Q4 361 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 RIPPLY2Q5TAB7 128 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 BICRALQ6AI39 1079 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 ULK2Q8IYT8 1036 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 METTL4Q8N3J2 472 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 LIX1Q8N485 282 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 C17orf47Q8NEP4 570 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 OR4F6Q8NGB9 312 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 SPPL2AQ8TCT8 520 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 ZNF597Q96LX8 424 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 SECISBP2Q96T21 854 aaKnown RBP14.75□□□□□ -0.05
CLN3-229ENST00000567963 PAFAH2Q99487 392 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 TSPYL1Q9H0U9 437 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 DMGDHQ9UI17 866 aaKnown RBP14.75□□□□□ -0.05
CLN3-229ENST00000567963 IKBKGQ9Y6K9 419 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 A0A1B0GTL3 188 aa14.74□□□□□ -0.05
CLN3-229ENST00000567963 KRT38O76015 456 aa14.74□□□□□ -0.05
CLN3-229ENST00000567963 SNX4O95219 450 aa14.74□□□□□ -0.05
CLN3-229ENST00000567963 CPMP14384 443 aa14.74□□□□□ -0.05
CLN3-229ENST00000567963 PORP16435 677 aaPredicted RBP14.74□□□□□ -0.05
CLN3-229ENST00000567963 S1PR1P21453 382 aa14.74□□□□□ -0.05
CLN3-229ENST00000567963 TMED10P49755 219 aaKnown RBP14.74□□□□□ -0.05
CLN3-229ENST00000567963 DLX5P56178 289 aa14.74□□□□□ -0.05
CLN3-229ENST00000567963 NRG3P56975 720 aa14.74□□□□□ -0.05
CLN3-229ENST00000567963 MYBPHQ13203 477 aa14.74□□□□□ -0.05
CLN3-229ENST00000567963 SEM1Q6ZVN7 128 aa14.74□□□□□ -0.05
CLN3-229ENST00000567963 RPS27LQ71UM5 84 aaKnown RBP14.74□□□□□ -0.05
CLN3-229ENST00000567963 MYRIPQ8NFW9 859 aa14.74□□□□□ -0.05
CLN3-229ENST00000567963 OR7G1Q8NGA0 311 aa14.74□□□□□ -0.05
CLN3-229ENST00000567963 RILPQ96NA2 401 aa14.74□□□□□ -0.05
CLN3-229ENST00000567963 MRPL57Q9BQC6 102 aaKnown RBP14.74□□□□□ -0.05
CLN3-229ENST00000567963 ANGPTL4Q9BY76 406 aa14.74□□□□□ -0.05
CLN3-229ENST00000567963 ELOVL6Q9H5J4 265 aa14.74□□□□□ -0.05
CLN3-229ENST00000567963 FARSBQ9NSD9 589 aaKnown RBP14.74□□□□□ -0.05
CLN3-229ENST00000567963 CES1P1Q9UKY3 287 aa14.74□□□□□ -0.05
CLN3-229ENST00000567963 AHRRA9YTQ3 701 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 PPP6CO00743 305 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 URI1O94763 535 aaPredicted RBP14.73□□□□□ -0.05
CLN3-229ENST00000567963 RPS17P08708 135 aaKnown RBP14.73□□□□□ -0.05
CLN3-229ENST00000567963 NT5EP21589 574 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 CNTFP26441 200 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 CASP3P42574 277 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 MAPK12P53778 367 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 SGO1Q5FBB7 561 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 FNDC7Q5VTL7 733 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 SLC48A1Q6P1K1 146 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 TAOK1Q7L7X3 1001 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 COMMD6Q7Z4G1 85 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 WDR53Q7Z5U6 358 aaPredicted RBP14.73□□□□□ -0.05
CLN3-229ENST00000567963 PACS2Q86VP3 889 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 TMEM200AQ86VY9 491 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 TMEM151AQ8N4L1 468 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 MMGT1Q8N4V1 131 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 DCAKDQ8WVC6 231 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 GNRHR2Q96P88 292 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 TIMP4Q99727 224 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 MRPL46Q9H2W6 279 aaKnown RBP14.73□□□□□ -0.05
CLN3-229ENST00000567963 UBQLN3Q9H347 655 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 ZNF180Q9UJW8 692 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 SLC12A4Q9UP95 1085 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 L3MBTL1Q9Y468 752 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 PCDHA9Q9Y5H5 950 aa14.73□□□□□ -0.05
CLN3-229ENST00000567963 MED13LQ71F56 2210 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 EXPH5Q8NEV8 1989 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 C15orf38-AP3S2A0A0A6YYH1 394 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 C1orf226A1L170 272 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 HSPB2A8KAH6 182 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 POC1B-GALNT4F8VUJ3 575 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 GUCY1B2O75343 617 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 TRAPPC6AO75865 159 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 EPPINO95925 133 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 OTCP00480 354 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 PDYNP01213 254 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 HPNP05981 417 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 SBK3P0C264 359 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 GPX3P22352 226 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 ABCD3P28288 659 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 CDH13P55290 713 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 CRYZQ08257 329 aaKnown RBP14.72□□□□□ -0.05
CLN3-229ENST00000567963 GALNT1Q10472 559 aaPredicted RBP14.72□□□□□ -0.05
CLN3-229ENST00000567963 MAP4K2Q12851 820 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 HSPB2Q16082 182 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 WHAMMP3Q1A5X7 153 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 PRICKLE4Q2TBC4 344 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 C6orf163Q5TEZ5 329 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 LETMD1Q6P1Q0 360 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 ARSKQ6UWY0 536 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 ZNF483Q8TF39 744 aaPredicted RBP14.72□□□□□ -0.05
CLN3-229ENST00000567963 SELENOMQ8WWX9 145 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 IFT81Q8WYA0 676 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 NTNG2Q96CW9 530 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 FMO2Q99518 471 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 C1QTNF3Q9BXJ4 246 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 BRF2Q9HAW0 419 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 ZNF225Q9UK10 706 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 DTX4Q9Y2E6 619 aa14.72□□□□□ -0.05
CLN3-229ENST00000567963 GOLGA6L10A6NI86 522 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 TRIM49D1C9J1S8 452 aa14.71□□□□□ -0.05
CLN3-229ENST00000567963 ZWINTO95229 277 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms