RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CRHP06850 196 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 FAM157CP0CG43 387 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 NCF1P14598 390 aaPredicted RBP6.64□□□□□ -1.35
VPS4A-203ENST00000564399 HIST1H1TP22492 207 aaPredicted RBP6.64□□□□□ -1.35
VPS4A-203ENST00000564399 IDUAP35475 653 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 CDKL1Q00532 357 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 SLAMF1Q13291 335 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 PPP1R3AQ16821 1122 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 KRTAP24-1Q3LI83 254 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 BEX5Q5H9J7 111 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 OR2A2Q6IF42 318 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 FAM45BPQ6NSW5 357 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 VWA1Q6PCB0 445 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 ZNF474Q6S9Z5 364 aaPredicted RBP6.64□□□□□ -1.35
VPS4A-203ENST00000564399 ZNF704Q6ZNC4 412 aaPredicted RBP6.64□□□□□ -1.35
VPS4A-203ENST00000564399 UBE3DQ7Z6J8 389 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 ADGRE4PQ86SQ3 457 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 IFNEQ86WN2 208 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 AGGF1Q8N302 714 aaeCLIP6.64□□□□□ -1.35
VPS4A-203ENST00000564399 NKAPQ8N5F7 415 aaKnown RBP6.64□□□□□ -1.35
VPS4A-203ENST00000564399 SNX31Q8N9S9 440 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 FAM45AQ8TCE6 357 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 ANKRD7Q92527 254 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 TANKQ92844 425 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 RIT1Q92963 219 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 TP53INP1Q96A56 240 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 STARD4Q96DR4 205 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 PTCD3Q96EY7 689 aaKnown RBP6.64□□□□□ -1.35
VPS4A-203ENST00000564399 PDLIM5Q96HC4 596 aaKnown RBP6.64□□□□□ -1.35
VPS4A-203ENST00000564399 ZNF845Q96IR2 970 aaPredicted RBP6.64□□□□□ -1.35
VPS4A-203ENST00000564399 VPS39Q96JC1 886 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 SIGLEC10Q96LC7 697 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 UCN2Q96RP3 112 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 PELOQ9BRX2 385 aaKnown RBP6.64□□□□□ -1.35
VPS4A-203ENST00000564399 DESI2Q9BSY9 194 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 KLHL4Q9C0H6 718 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 ACTR8Q9H981 624 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 PPANQ9NQ55 473 aaKnown RBP6.64□□□□□ -1.35
VPS4A-203ENST00000564399 SERHLQ9NQF3 203 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 DNAJC11Q9NVH1 559 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 MS4A12Q9NXJ0 267 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 ELOVL5Q9NYP7 299 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 GPRC5BQ9NZH0 403 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 CTNNAL1Q9UBT7 734 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 ZNF490Q9ULM2 529 aaPredicted RBP6.64□□□□□ -1.35
VPS4A-203ENST00000564399 LAMP3Q9UQV4 416 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 ZKSCAN5Q9Y2L8 839 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 PCNX3Q9H6A9 2034 aa6.64□□□□□ -1.35
VPS4A-203ENST00000564399 UQCRHLA0A096LP55 91 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.63□□□□□ -1.35
VPS4A-203ENST00000564399 LRRC14BA6NHZ5 514 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 SLC22A20A6NK97 555 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 SAP18O00422 153 aaKnown RBP6.63□□□□□ -1.35
VPS4A-203ENST00000564399 HS3ST1O14792 307 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 WIPF1O43516 503 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 PRKRAO75569 313 aaKnown RBP6.63□□□□□ -1.35
VPS4A-203ENST00000564399 CBR3O75828 277 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 GPR75O95800 540 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 TGM6O95932 706 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 PLAUP00749 431 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 TGFB1P01137 390 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 PCNAP12004 261 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 PGAM1P18669 254 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 TBXA2RP21731 343 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 TCEA1P23193 301 aaKnown RBP6.63□□□□□ -1.35
VPS4A-203ENST00000564399 LOXP28300 417 aaPredicted RBP6.63□□□□□ -1.35
VPS4A-203ENST00000564399 SSTR4P31391 388 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 CCKARP32238 428 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 BUD31P41223 144 aaPredicted RBP6.63□□□□□ -1.35
VPS4A-203ENST00000564399 SLC6A12P48065 614 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 PCYT1AP49585 367 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 RAP1GDS1P52306 607 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 RPS13P62277 151 aaKnown RBP6.63□□□□□ -1.35
VPS4A-203ENST00000564399 RPS4XP62701 263 aaKnown RBP6.63□□□□□ -1.35
VPS4A-203ENST00000564399 IRF8Q02556 426 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 LAPTM5Q13571 262 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 DOC2AQ14183 400 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 CRYMQ14894 314 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 ETFDHQ16134 617 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 SPRED3Q2MJR0 410 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 TMEM35AQ53FP2 167 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 FBXO48Q5FWF7 155 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 PAGE2BQ5JRK9 111 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 C18orf63Q68DL7 685 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 AAGABQ6PD74 315 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 SH2D5Q6ZV89 423 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 ADAMTSL2Q86TH1 951 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 GPR180Q86V85 440 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 RNF10Q8N5U6 811 aaKnown RBP6.63□□□□□ -1.35
VPS4A-203ENST00000564399 ZNF611Q8N823 705 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 IGFBPL1Q8WX77 278 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 GTPBP3Q969Y2 492 aaKnown RBP6.63□□□□□ -1.35
VPS4A-203ENST00000564399 RHBDF1Q96CC6 855 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 REPS1Q96D71 796 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 MARK4Q96L34 752 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 SFXN2Q96NB2 322 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 G6PC3Q9BUM1 346 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 EFCAB11Q9BUY7 163 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 C19orf24Q9BVV8 132 aa6.63□□□□□ -1.35
VPS4A-203ENST00000564399 SORBS1Q9BX66 1292 aaKnown RBP6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms