RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PEX19P40855 299 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 MASP1P48740 699 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 ZNF136P52737 540 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 DGKQP52824 942 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 ALDH18A1P54886 795 aaKnown RBP15.43■□□□□ 0.06
CLN3-211ENST00000564091 PPP2R2AP63151 447 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 FOXD4Q12950 439 aaPredicted RBP15.43■□□□□ 0.06
CLN3-211ENST00000564091 TOMM20Q15388 145 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 FAM83EQ2M2I3 478 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 FBXL19-AS1Q494R0 122 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 EIPR1Q53HC9 387 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 VASNQ6EMK4 673 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 NUDT13Q86X67 352 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 LACC1Q8IV20 430 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 GALNT12Q8IXK2 581 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 ZNF615Q8N8J6 731 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 FBXO25Q8TCJ0 367 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 ADIPOR1Q96A54 375 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 TP53INP1Q96A56 240 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 ANGPTL4Q9BY76 406 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 PRDM14Q9GZV8 571 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 OR10A5Q9H207 317 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 GSX1Q9H4S2 264 aaPredicted RBP15.43■□□□□ 0.06
CLN3-211ENST00000564091 GRPEL1Q9HAV7 217 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 ZNF629Q9UEG4 869 aaPredicted RBP15.43■□□□□ 0.06
CLN3-211ENST00000564091 MTRF1LQ9UGC7 380 aaKnown RBP15.43■□□□□ 0.06
CLN3-211ENST00000564091 C15orf41Q9Y2V0 281 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 PHF3Q92576 2039 aaKnown RBP15.43■□□□□ 0.06
CLN3-211ENST00000564091 A0A087X1B8 175 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 FOXE1O00358 373 aaPredicted RBP15.42■□□□□ 0.06
CLN3-211ENST00000564091 GNB5O14775 395 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 UGDHO60701 494 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 HOXB4P17483 251 aaPredicted RBP15.42■□□□□ 0.06
CLN3-211ENST00000564091 BMP7P18075 431 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 NT5EP21589 574 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 TACR1P25103 407 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 CASP3P42574 277 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 XKP51811 444 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 FUT7Q11130 342 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 ACAP2Q15057 778 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 PCBP2Q15366 365 aaKnown RBP eCLIP15.42■□□□□ 0.06
CLN3-211ENST00000564091 WIPI1Q5MNZ9 446 aaPredicted RBP15.42■□□□□ 0.06
CLN3-211ENST00000564091 DCST1Q5T197 706 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 OR52E8Q6IFG1 317 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 ZDHHC24Q6UX98 284 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 PACS2Q86VP3 889 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 L3MBTL4Q8NA19 623 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 LINC01560Q8TB33 94 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 LRRC46Q96FV0 321 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 GPR78Q96P69 363 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 TRIB1Q96RU8 372 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 UGT2B28Q9BY64 529 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 NOL11Q9H8H0 719 aaKnown RBP15.42■□□□□ 0.06
CLN3-211ENST00000564091 RYDENQ9NUL5 291 aaKnown RBP15.42■□□□□ 0.06
CLN3-211ENST00000564091 PSD3Q9NYI0 1048 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 CPSF2Q9P2I0 782 aaKnown RBP15.42■□□□□ 0.06
CLN3-211ENST00000564091 PYCARDQ9ULZ3 195 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 IKBKGQ9Y6K9 419 aa15.42■□□□□ 0.06
CLN3-211ENST00000564091 A0A096LPK6 155 aa15.41■□□□□ 0.06
CLN3-211ENST00000564091 TUBAL3A6NHL2 446 aa15.41■□□□□ 0.06
CLN3-211ENST00000564091 KLK1P06870 262 aa15.41■□□□□ 0.06
CLN3-211ENST00000564091 PIK3R1P27986 724 aa15.41■□□□□ 0.06
CLN3-211ENST00000564091 ARL1P40616 181 aaPredicted RBP15.41■□□□□ 0.06
CLN3-211ENST00000564091 NRG3P56975 720 aa15.41■□□□□ 0.06
CLN3-211ENST00000564091 NAB1Q13506 487 aa15.41■□□□□ 0.06
CLN3-211ENST00000564091 DAZAP2Q15038 168 aaPredicted RBP15.41■□□□□ 0.06
CLN3-211ENST00000564091 NNATQ16517 81 aa15.41■□□□□ 0.06
CLN3-211ENST00000564091 NSUN5P2Q63ZY6 315 aa15.41■□□□□ 0.06
CLN3-211ENST00000564091 DESI1Q6ICB0 168 aa15.41■□□□□ 0.06
CLN3-211ENST00000564091 YRDCQ86U90 279 aaKnown RBP15.41■□□□□ 0.06
CLN3-211ENST00000564091 PM20D2Q8IYS1 436 aa15.41■□□□□ 0.06
CLN3-211ENST00000564091 OR4K14Q8NGD5 310 aa15.41■□□□□ 0.06
CLN3-211ENST00000564091 OR52B6Q8NGF0 335 aa15.41■□□□□ 0.06
CLN3-211ENST00000564091 ATP6V1E2Q96A05 226 aa15.41■□□□□ 0.06
CLN3-211ENST00000564091 WDYHV1Q96HA8 205 aa15.41■□□□□ 0.06
CLN3-211ENST00000564091 SECISBP2Q96T21 854 aaKnown RBP15.41■□□□□ 0.06
CLN3-211ENST00000564091 DTX4Q9Y2E6 619 aa15.41■□□□□ 0.06
CLN3-211ENST00000564091 UTP11Q9Y3A2 253 aaKnown RBP15.41■□□□□ 0.06
CLN3-211ENST00000564091 C2orf72A6NCS6 295 aa15.4■□□□□ 0.06
CLN3-211ENST00000564091 OR7A17O14581 309 aa15.4■□□□□ 0.06
CLN3-211ENST00000564091 KLHL2O95198 593 aa15.4■□□□□ 0.06
CLN3-211ENST00000564091 CLDN9O95484 217 aa15.4■□□□□ 0.06
CLN3-211ENST00000564091 ABCB1P08183 1280 aaPredicted RBP15.4■□□□□ 0.06
CLN3-211ENST00000564091 ABCD3P28288 659 aa15.4■□□□□ 0.06
CLN3-211ENST00000564091 TMED10P49755 219 aaKnown RBP15.4■□□□□ 0.06
CLN3-211ENST00000564091 GUCY2DQ02846 1103 aa15.4■□□□□ 0.06
CLN3-211ENST00000564091 UAP1Q16222 522 aaPredicted RBP15.4■□□□□ 0.06
CLN3-211ENST00000564091 NHSL2Q5HYW2 709 aa15.4■□□□□ 0.06
CLN3-211ENST00000564091 FBXW10Q5XX13 1052 aa15.4■□□□□ 0.06
CLN3-211ENST00000564091 TIGD3Q6B0B8 471 aa15.4■□□□□ 0.06
CLN3-211ENST00000564091 PTGR2Q8N8N7 351 aaPredicted RBP15.4■□□□□ 0.06
CLN3-211ENST00000564091 ABTB1Q969K4 478 aaPredicted RBP15.4■□□□□ 0.06
CLN3-211ENST00000564091 HSPBAP1Q96EW2 488 aa15.4■□□□□ 0.06
CLN3-211ENST00000564091 SERPINI1Q99574 410 aa15.4■□□□□ 0.06
CLN3-211ENST00000564091 NXF5Q9H1B4 397 aaKnown RBP15.4■□□□□ 0.06
CLN3-211ENST00000564091 FOXD3Q9UJU5 478 aaPredicted RBP15.4■□□□□ 0.06
CLN3-211ENST00000564091 EDARQ9UNE0 448 aa15.4■□□□□ 0.06
CLN3-211ENST00000564091 TNPO3Q9Y5L0 923 aaKnown RBP15.4■□□□□ 0.06
CLN3-211ENST00000564091 CD8B2A6NJW9 211 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 EEF1E1-BLOC1S5C9J1V9 151 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms