RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 KCNC2Q96PR1 638 aa9.39□□□□□ -0.91
SF3B3-204ENST00000563739 NAPGQ99747 312 aaPredicted RBP9.39□□□□□ -0.91
SF3B3-204ENST00000563739 OPN3Q9H1Y3 402 aaPredicted RBP9.39□□□□□ -0.91
SF3B3-204ENST00000563739 COPS7BQ9H9Q2 264 aaPredicted RBP9.39□□□□□ -0.91
SF3B3-204ENST00000563739 GALNT9Q9HCQ5 603 aa9.39□□□□□ -0.91
SF3B3-204ENST00000563739 PACSIN3Q9UKS6 424 aa9.39□□□□□ -0.91
SF3B3-204ENST00000563739 EIF3LQ9Y262 564 aaKnown RBP9.39□□□□□ -0.91
SF3B3-204ENST00000563739 VWA7Q9Y334 891 aa9.39□□□□□ -0.91
SF3B3-204ENST00000563739 PKD1L1Q8TDX9 2849 aa9.39□□□□□ -0.91
SF3B3-204ENST00000563739 A0A088AWK7 358 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 C2orf72A6NCS6 295 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 RNF223E7ERA6 249 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 SAP18O00422 153 aaKnown RBP9.38□□□□□ -0.91
SF3B3-204ENST00000563739 CES2O00748 559 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 PLPP1O14494 284 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 MSTNO14793 375 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 PHF1O43189 567 aaPredicted RBP9.38□□□□□ -0.91
SF3B3-204ENST00000563739 EEDO75530 441 aaKnown RBP9.38□□□□□ -0.91
SF3B3-204ENST00000563739 S1PR1P21453 382 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 FPR1P21462 350 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 ZNF10P21506 573 aaPredicted RBP9.38□□□□□ -0.91
SF3B3-204ENST00000563739 CPN2P22792 545 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 CD79BP40259 229 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 CASP2P42575 452 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 MSH2P43246 934 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 KIR2DL2P43627 348 aaPredicted RBP9.38□□□□□ -0.91
SF3B3-204ENST00000563739 CPA2P48052 419 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 B3GALT5-AS1P59052 145 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 SARNPP82979 210 aaKnown RBP9.38□□□□□ -0.91
SF3B3-204ENST00000563739 PLIN5Q00G26 463 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 DMTNQ08495 405 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 ZNF267Q14586 743 aaPredicted RBP9.38□□□□□ -0.91
SF3B3-204ENST00000563739 TGFBIQ15582 683 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 STEAP4Q687X5 459 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 TMEM81Q6P7N7 255 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 RNF111Q6ZNA4 994 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 BTLAQ7Z6A9 289 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 HIPK1Q86Z02 1210 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 LAS2Q8IYD9 372 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 ST13P4Q8IZP2 240 aaPredicted RBP9.38□□□□□ -0.91
SF3B3-204ENST00000563739 WDSUB1Q8N9V3 476 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 GABPB2Q8TAK5 448 aaPredicted RBP9.38□□□□□ -0.91
SF3B3-204ENST00000563739 RNF138Q8WVD3 245 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 ANKRD7Q92527 254 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 PTCD3Q96EY7 689 aaKnown RBP9.38□□□□□ -0.91
SF3B3-204ENST00000563739 MS4A14Q96JA4 679 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 SECISBP2Q96T21 854 aaKnown RBP9.38□□□□□ -0.91
SF3B3-204ENST00000563739 NAP1L3Q99457 506 aaPredicted RBP9.38□□□□□ -0.91
SF3B3-204ENST00000563739 TMEM204Q9BSN7 226 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 TBCDQ9BTW9 1192 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 TRIM54Q9BYV2 358 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 PITHD1Q9GZP4 211 aaPredicted RBP9.38□□□□□ -0.91
SF3B3-204ENST00000563739 NXF5Q9H1B4 397 aaKnown RBP9.38□□□□□ -0.91
SF3B3-204ENST00000563739 PIGMQ9H3S5 423 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 SERHLQ9NQF3 203 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 WWOXQ9NZC7 414 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 GPRC5BQ9NZH0 403 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 ASB4Q9Y574 426 aa9.38□□□□□ -0.91
SF3B3-204ENST00000563739 A0A1W2PR48 441 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 ANKDD1BA6NHY2 528 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 NCF1BA6NI72 391 aaPredicted RBP9.37□□□□□ -0.91
SF3B3-204ENST00000563739 OR6C76A6NM76 312 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 NCF1CA8MVU1 366 aaPredicted RBP9.37□□□□□ -0.91
SF3B3-204ENST00000563739 KIF2AO00139 706 aaPredicted RBP9.37□□□□□ -0.91
SF3B3-204ENST00000563739 PLOD2O00469 737 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 SNX4O95219 450 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 ACTL6AO96019 429 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 ABCB1P08183 1280 aaPredicted RBP9.37□□□□□ -0.91
SF3B3-204ENST00000563739 CYP4B1P13584 511 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 NCF1P14598 390 aaPredicted RBP9.37□□□□□ -0.91
SF3B3-204ENST00000563739 ZNF708P17019 499 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 TCP1P17987 556 aaKnown RBP9.37□□□□□ -0.91
SF3B3-204ENST00000563739 GPX3P22352 226 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 ABCD3P28288 659 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 UGT2B10P36537 528 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 HSPA7P48741 367 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 HNMTP50135 292 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 OR4D1Q15615 310 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 CYP1B1Q16678 543 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 SPANXN3Q5MJ09 141 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 C10orf62Q5T681 223 aaPredicted RBP9.37□□□□□ -0.91
SF3B3-204ENST00000563739 ANGPTL8Q6UXH0 198 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 ZC3HC1Q86WB0 502 aaKnown RBP9.37□□□□□ -0.91
SF3B3-204ENST00000563739 KRT78Q8N1N4 520 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 MEIOBQ8N635 442 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 LILRB1Q8NHL6 650 aaPredicted RBP9.37□□□□□ -0.91
SF3B3-204ENST00000563739 ACTRT1Q8TDG2 376 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 EGFL8Q99944 293 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 OR51B5Q9H339 312 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 RPF2Q9H7B2 306 aaKnown RBP9.37□□□□□ -0.91
SF3B3-204ENST00000563739 CXorf21Q9HAI6 301 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 DNAJC11Q9NVH1 559 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 CORO1CQ9ULV4 474 aaPredicted RBP9.37□□□□□ -0.91
SF3B3-204ENST00000563739 CADP27708 2225 aa9.37□□□□□ -0.91
SF3B3-204ENST00000563739 A0A0A6YYD5 115 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.36□□□□□ -0.91
SF3B3-204ENST00000563739 GLOD5A6NK44 160 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 H0Y3Z8 333 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 H0YC42 278 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 OVOL3O00110 214 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms