RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 ZGRF1Q86YA3 2104 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 GALNT12Q8IXK2 581 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 CLECL1Q8IZS7 167 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 BEST3Q8N1M1 668 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 ZNF615Q8N8J6 731 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 MORN4Q8NDC4 146 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 CEP70Q8NHQ1 597 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 COQ8BQ96D53 544 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 ZNF764Q96H86 408 aaPredicted RBP9.09□□□□□ -0.95
CLK3-208ENST00000562626 BBS4Q96RK4 519 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 SMAD5Q99717 465 aaKnown RBP9.09□□□□□ -0.95
CLK3-208ENST00000562626 CCDC28BQ9BUN5 200 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 SLC25A23Q9BV35 468 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 CLMPQ9H6B4 373 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 PFDN4Q9NQP4 134 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 PLA2G3Q9NZ20 509 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 ENTPD4Q9Y227 616 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 WBP11Q9Y2W2 641 aaKnown RBP9.09□□□□□ -0.95
CLK3-208ENST00000562626 CLCA3PQ9Y6N3 262 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 ZNF780BQ9Y6R6 833 aa9.09□□□□□ -0.95
CLK3-208ENST00000562626 SVILO95425 2214 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 ERVH48-1M5A8F1 160 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 UBDO15205 165 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 NADKO95544 446 aaPredicted RBP9.08□□□□□ -0.96
CLK3-208ENST00000562626 C6orf47O95873 294 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 PRB1P04280 392 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 PRPS1L1P21108 318 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 DRD4P21917 467 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 GPX3P22352 226 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 GALNSP34059 522 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 HPCAL1P37235 193 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 EMDP50402 254 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 CLCN2P51788 898 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 GNGT1P63211 74 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 RNF4P78317 190 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 C19orf57Q0VDD7 668 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 MAP4K2Q12851 820 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 HSPB3Q12988 150 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 MAD2L1Q13257 205 aaPredicted RBP9.08□□□□□ -0.96
CLK3-208ENST00000562626 PGS1Q32NB8 556 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 PDCD4Q53EL6 469 aaKnown RBP9.08□□□□□ -0.96
CLK3-208ENST00000562626 CPTPQ5TA50 214 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 ACAD11Q709F0 780 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 WDR53Q7Z5U6 358 aaPredicted RBP9.08□□□□□ -0.96
CLK3-208ENST00000562626 ANKRD46Q86W74 232 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 ZNF227Q86WZ6 799 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 FUNDC1Q8IVP5 155 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 HOMEZQ8IX15 550 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 CLEC4FQ8N1N0 589 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 VWA5B2Q8N398 1253 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 RBMXL3Q8N7X1 1067 aaKnown RBP9.08□□□□□ -0.96
CLK3-208ENST00000562626 CATSPER1Q8NEC5 780 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 OR52R1Q8NGF1 315 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 C16orf52Q8NHV5 167 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 ZNF675Q8TD23 568 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 C10orf82Q8WW14 230 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 DAZLQ92904 295 aaKnown RBP9.08□□□□□ -0.96
CLK3-208ENST00000562626 MTERF3Q96E29 417 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 LMF1Q96S06 567 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 PELOQ9BRX2 385 aaKnown RBP9.08□□□□□ -0.96
CLK3-208ENST00000562626 DUSP26Q9BV47 211 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 DPY30Q9C005 99 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 OR10A5Q9H207 317 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 CDCP1Q9H5V8 836 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 CXorf36Q9H7Y0 433 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 SDR39U1Q9NRG7 319 aaPredicted RBP9.08□□□□□ -0.96
CLK3-208ENST00000562626 ANKRD10Q9NXR5 420 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 PCDHGA9Q9Y5G4 932 aaKnown RBP9.08□□□□□ -0.96
CLK3-208ENST00000562626 COPG1Q9Y678 874 aaKnown RBP9.08□□□□□ -0.96
CLK3-208ENST00000562626 GTF3C1Q12789 2109 aa9.08□□□□□ -0.96
CLK3-208ENST00000562626 ZNF407Q9C0G0 2248 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 ASPDHA6ND91 283 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 WWP2O00308 870 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 UPK1AO00322 258 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 ATXN7O15265 892 aaPredicted RBP9.07□□□□□ -0.96
CLK3-208ENST00000562626 PSMG1O95456 288 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 WDPCPO95876 746 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 CDKN2CP42773 168 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 MLF1P58340 268 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 MFAP5Q13361 173 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 EBPQ15125 230 aaKnown RBP9.07□□□□□ -0.96
CLK3-208ENST00000562626 NNATQ16517 81 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 FAM174BQ3ZCQ3 159 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 NADK2Q4G0N4 442 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 CRB2Q5IJ48 1285 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 ACER2Q5QJU3 275 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 DESI1Q6ICB0 168 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 JMJD6Q6NYC1 403 aaPredicted RBP9.07□□□□□ -0.96
CLK3-208ENST00000562626 IGFL2Q6UWQ7 119 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 LYPD8Q6UX82 237 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 NPSR1Q6W5P4 371 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 TMEM64Q6YI46 380 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 RNF111Q6ZNA4 994 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 CAMKMTQ7Z624 323 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 RPS19BP1Q86WX3 136 aaKnown RBP9.07□□□□□ -0.96
CLK3-208ENST00000562626 FAM9CQ8IZT9 166 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 ARMC10Q8N2F6 343 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 ZNF441Q8N8Z8 693 aa9.07□□□□□ -0.96
CLK3-208ENST00000562626 C9orf43Q8TAL5 461 aaPredicted RBP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms