RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 MRPS30Q9NP92 439 aaKnown RBP4□□□□□ -1.77
SPG11-211ENST00000558561 CUTCQ9NTM9 273 aa4□□□□□ -1.77
SPG11-211ENST00000558561 LUZP4Q9P127 313 aa4□□□□□ -1.77
SPG11-211ENST00000558561 CTSFQ9UBX1 484 aa4□□□□□ -1.77
SPG11-211ENST00000558561 TRMT6Q9UJA5 497 aaKnown RBP4□□□□□ -1.77
SPG11-211ENST00000558561 ZNF490Q9ULM2 529 aaPredicted RBP4□□□□□ -1.77
SPG11-211ENST00000558561 NFU1Q9UMS0 254 aa4□□□□□ -1.77
SPG11-211ENST00000558561 PLCL2Q9UPR0 1127 aa4□□□□□ -1.77
SPG11-211ENST00000558561 SLC22A14Q9Y267 594 aa4□□□□□ -1.77
SPG11-211ENST00000558561 CSAG2Q9Y5P2 127 aa4□□□□□ -1.77
SPG11-211ENST00000558561 SPENQ96T58 3664 aaKnown RBP3.99□□□□□ -1.77
SPG11-211ENST00000558561 BOD1L1Q8NFC6 3051 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 SHANK1Q9Y566 2161 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 CROCCQ5TZA2 2017 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 A0A1W2PPM1 405 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 ZNF860A6NHJ4 632 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 LRRC3CA6NJW4 275 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 TARM1B6A8C7 271 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 POC1B-GALNT4F8VUJ3 575 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 SGK494L7N484 410 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 SOCS6O14544 535 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 MAP2K7O14733 419 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 ZNHIT1O43257 154 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 KALRNO60229 2985 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 COQ9O75208 318 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 ACSL3O95573 720 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 TTC4O95801 387 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 F10P00742 488 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 IGLV2-14P01704 120 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 CATP04040 527 aaKnown RBP3.99□□□□□ -1.77
SPG11-211ENST00000558561 C2P06681 752 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 HNRNPCP07910 306 aaKnown RBP eCLIP3.99□□□□□ -1.77
SPG11-211ENST00000558561 SLC35E2BP0CK96 405 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 ZNF37AP17032 561 aaPredicted RBP3.99□□□□□ -1.77
SPG11-211ENST00000558561 CD22P20273 847 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 CYP2A7P20853 494 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 FPR3P25089 353 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 CD82P27701 267 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 CMPK1P30085 196 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 RPA3P35244 121 aaPredicted RBP3.99□□□□□ -1.77
SPG11-211ENST00000558561 HTR3AP46098 478 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 CSRP3P50461 194 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 MLLT10P55197 1068 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 POLE2P56282 527 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 TBPL1P62380 186 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 BTG2P78543 158 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 DCDP81605 110 aaKnown RBP3.99□□□□□ -1.77
SPG11-211ENST00000558561 PSG6Q00889 435 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 SRSF1Q07955 248 aaKnown RBP eCLIP3.99□□□□□ -1.77
SPG11-211ENST00000558561 ATP1A4Q13733 1029 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 RUNX2Q13950 521 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 FRG1Q14331 258 aaKnown RBP3.99□□□□□ -1.77
SPG11-211ENST00000558561 CSHL1Q14406 222 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 TMED2Q15363 201 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 UAP1Q16222 522 aaPredicted RBP3.99□□□□□ -1.77
SPG11-211ENST00000558561 NADK2Q4G0N4 442 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 NKAIN1Q4KMZ8 207 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 PRR30Q53SZ7 412 aaPredicted RBP3.99□□□□□ -1.77
SPG11-211ENST00000558561 FAM45BPQ6NSW5 357 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 RHBDD2Q6NTF9 364 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 MZT2AQ6P582 158 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 KIRREL2Q6UWL6 708 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 NEK10Q6ZWH5 1172 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 MAATS1Q7Z4T9 603 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 WDR53Q7Z5U6 358 aaPredicted RBP3.99□□□□□ -1.77
SPG11-211ENST00000558561 ADCK2Q7Z695 626 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 THOC6Q86W42 341 aaKnown RBP3.99□□□□□ -1.77
SPG11-211ENST00000558561 ZGRF1Q86YA3 2104 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 CCDC28AQ8IWP9 274 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 CENPLQ8N0S6 344 aaPredicted RBP3.99□□□□□ -1.77
SPG11-211ENST00000558561 CATSPER1Q8NEC5 780 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 FDCSPQ8NFU4 85 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 ABHD11Q8NFV4 315 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 OR4K1Q8NGD4 311 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 OR9A4Q8NGU2 314 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 FAM45AQ8TCE6 357 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 MCOLN3Q8TDD5 553 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 KCTD4Q8WVF5 259 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 SMPDL3AQ92484 453 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 EXT2Q93063 718 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 NEIL2Q969S2 332 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 RHBDF1Q96CC6 855 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 CTHRC1Q96CG8 243 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 ZG16BQ96DA0 208 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 LRRC39Q96DD0 335 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 C19orf60Q96EN9 201 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 MED8Q96G25 268 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 WDYHV1Q96HA8 205 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 PDLIM5Q96HC4 596 aaKnown RBP3.99□□□□□ -1.77
SPG11-211ENST00000558561 UBXN10Q96LJ8 280 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 FOPNLQ96NB1 174 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 TEFMQ96QE5 360 aaKnown RBP3.99□□□□□ -1.77
SPG11-211ENST00000558561 GPR22Q99680 433 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 RBBP8Q99708 897 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 SELENOSQ9BQE4 189 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 ZPBPQ9BS86 351 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 TMEM79Q9BSE2 394 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 FAM167BQ9BTA0 163 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 NUDT9Q9BW91 350 aa3.99□□□□□ -1.77
SPG11-211ENST00000558561 KRTAP17-1Q9BYP8 105 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 174.7 ms