RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CASP8AP2Q9UKL3 1982 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 MN1Q10571 1320 aaPredicted RBP10.75□□□□□ -0.69
LDLR-208ENST00000558518 A0A0B4J203 849 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 OR6C75A6NL08 312 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 CHURC1-FNTBB4DL54 471 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 LANCL1O43813 399 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 AKAP8O43823 692 aaKnown RBP10.75□□□□□ -0.69
LDLR-208ENST00000558518 VNN2O95498 520 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 PRSS53Q2L4Q9 553 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 FCRLBQ6BAA4 426 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 HIST2H2AA3Q6FI13 130 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 TPRG1Q6ZUI0 275 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 COMMD7Q86VX2 200 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 SPERTQ8NA61 448 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 OR2AP1Q8NGE2 309 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 TEX47Q8TBZ9 253 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 C16orf78Q8WTQ4 265 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 SLC6A18Q96N87 628 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 F2RL3Q96RI0 385 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 PLA2G12AQ9BZM1 189 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 NANSQ9NR45 359 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 ASIC5Q9NY37 505 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 BTNL2Q9UIR0 455 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 POLHQ9Y253 713 aa10.75□□□□□ -0.69
LDLR-208ENST00000558518 WDR90Q96KV7 1748 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 TDRD15B5MCY1 1934 aaKnown RBP10.74□□□□□ -0.69
LDLR-208ENST00000558518 SH3D21A4FU49 640 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 DUSP11O75319 330 aaKnown RBP10.74□□□□□ -0.69
LDLR-208ENST00000558518 HOXB6P17509 224 aaKnown RBP10.74□□□□□ -0.69
LDLR-208ENST00000558518 ENPP1P22413 925 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 ELAVL4P26378 380 aaKnown RBP10.74□□□□□ -0.69
LDLR-208ENST00000558518 GPR4P46093 362 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 CCR6P51684 374 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 WNT4P56705 351 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 BTN1A1Q13410 526 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 HSDL2Q6YN16 418 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 ADGRD2Q7Z7M1 963 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 GALNT11Q8NCW6 608 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 GANCQ8TET4 914 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 COL26A1Q96A83 441 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 SECISBP2Q96T21 854 aaKnown RBP10.74□□□□□ -0.69
LDLR-208ENST00000558518 MED20Q9H944 212 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 ZDHHC4Q9NPG8 344 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 CNOT2Q9NZN8 540 aaKnown RBP10.74□□□□□ -0.69
LDLR-208ENST00000558518 LEUTXA8MZ59 168 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 LALBAP00709 142 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 PDGFAP04085 211 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 ACVR1BP36896 505 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 ZNF157P51786 506 aaPredicted RBP10.74□□□□□ -0.69
LDLR-208ENST00000558518 CDH11P55287 796 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 SNRPD1P62314 119 aaKnown RBP10.74□□□□□ -0.69
LDLR-208ENST00000558518 RHAGQ02094 409 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 SYT14P1Q58G82 188 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 TCTN3Q6NUS6 607 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 RDH10Q8IZV5 341 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 OR4D11Q8NGI4 311 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 GCDHQ92947 438 aaPredicted RBP10.74□□□□□ -0.69
LDLR-208ENST00000558518 FAM46AQ96IP4 442 aaKnown RBP10.74□□□□□ -0.69
LDLR-208ENST00000558518 OR51V1Q9H2C8 321 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 ATP13A2Q9NQ11 1180 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 C1GALT1Q9NS00 363 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 ENOPH1Q9UHY7 261 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 EXO1Q9UQ84 846 aaKnown RBP10.74□□□□□ -0.69
LDLR-208ENST00000558518 NTNG1Q9Y2I2 539 aa10.74□□□□□ -0.69
LDLR-208ENST00000558518 LOC105371267A0A1B0GV96 52 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 SNTNA6NMZ2 147 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 FZD6O60353 706 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 HOXB9P17482 250 aaPredicted RBP10.73□□□□□ -0.69
LDLR-208ENST00000558518 CCND3P30281 292 aaPredicted RBP10.73□□□□□ -0.69
LDLR-208ENST00000558518 VIPR1P32241 457 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 SLC6A12P48065 614 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 TAS2R41P59536 307 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 CRYZQ08257 329 aaKnown RBP10.73□□□□□ -0.69
LDLR-208ENST00000558518 GLYR1Q49A26 553 aaPredicted RBP10.73□□□□□ -0.69
LDLR-208ENST00000558518 ESCO2Q56NI9 601 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 SFRP4Q6FHJ7 346 aaPredicted RBP10.73□□□□□ -0.69
LDLR-208ENST00000558518 ZNF730Q6ZMV8 503 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 C2orf69Q8N8R5 385 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 FKBP14Q9NWM8 211 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 NDUFB11Q9NX14 153 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 A0A0A6YYJ9 748 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 H3BUI4 141 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 KPNA3O00505 521 aaPredicted RBP10.73□□□□□ -0.69
LDLR-208ENST00000558518 SLC2A10O95528 541 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 ELK1P19419 428 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 MMP11P24347 488 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 MTNR1AP48039 350 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 GIPRP48546 466 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 BNC1Q01954 994 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 ZNF630Q2M218 657 aaPredicted RBP10.73□□□□□ -0.69
LDLR-208ENST00000558518 MPEG1Q2M385 716 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 HYAL4Q2M3T9 481 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 LDLRAD1Q5T700 205 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 LYPLAL1Q5VWZ2 237 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 LIPJQ5W064 366 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 FAAH2Q6GMR7 532 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 HSD11B1LQ7Z5J1 315 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 PROKR2Q8NFJ6 384 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 WDR20Q8TBZ3 569 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 RAET1EQ8TD07 263 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms