RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 IL20RAQ9UHF4 553 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 GPR34Q9UPC5 381 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 NTNG1Q9Y2I2 539 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 SCN3AQ9NY46 2000 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 SNRNP200O75643 2136 aaKnown RBP12.17□□□□□ -0.46
LDLR-207ENST00000558013 OR52A4PA6NMU1 304 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 TFECO14948 347 aaPredicted RBP12.17□□□□□ -0.46
LDLR-207ENST00000558013 KIAA0355O15063 1070 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 PTTG1O95997 202 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 CHRM4P08173 479 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 BUD31P41223 144 aaPredicted RBP12.17□□□□□ -0.46
LDLR-207ENST00000558013 SNRPGP62308 76 aaKnown RBP12.17□□□□□ -0.46
LDLR-207ENST00000558013 TEKQ02763 1124 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 MLF2Q15773 248 aaPredicted RBP12.17□□□□□ -0.46
LDLR-207ENST00000558013 WSCD2Q2TBF2 565 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 SYT14P1Q58G82 188 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 CLEC12AQ5QGZ9 265 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 C12orf73Q69YU5 71 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 C22orf42Q6IC83 251 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 PHC2Q8IXK0 858 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 CCDC116Q8IYX3 515 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 TBC1D19Q8N5T2 526 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 OR8K5Q8NH50 307 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 SPPL3Q8TCT6 385 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 CAPSLQ8WWF8 208 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 FUZQ9BT04 418 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 RHBGQ9H310 441 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 EQTNQ9NQ60 294 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 HCN2Q9UL51 889 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 IRAK3Q9Y616 596 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 V9GYH0 126 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 KIAA1549LQ6ZVL6 1849 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 ASNA1O43681 348 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 UGT2B17O75795 530 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 CDRT1O95170 752 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 ACP5P13686 325 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 DDX6P26196 483 aaKnown RBP eCLIP12.17□□□□□ -0.462e-8■■□□□ 14
LDLR-207ENST00000558013 IL12RB1P42701 662 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 CCR8P51685 355 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 NCBP2P52298 156 aaKnown RBP eCLIP12.17□□□□□ -0.46
LDLR-207ENST00000558013 IFITM2Q01629 132 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 DPTQ07507 201 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 ELAVL3Q14576 367 aaKnown RBP12.17□□□□□ -0.46
LDLR-207ENST00000558013 ATAT1Q5SQI0 421 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 USP30Q70CQ3 517 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 ERN2Q76MJ5 926 aaKnown RBP12.17□□□□□ -0.46
LDLR-207ENST00000558013 GATAD2AQ86YP4 633 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 TM9SF4Q92544 642 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 ZNF707Q96C28 371 aaPredicted RBP12.17□□□□□ -0.46
LDLR-207ENST00000558013 AMDHD1Q96NU7 426 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 TM9SF2Q99805 663 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 HOXD1Q9GZZ0 328 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 IMP3Q9NV31 184 aaKnown RBP12.17□□□□□ -0.46
LDLR-207ENST00000558013 SERGEFQ9UGK8 458 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 MGAT4BQ9UQ53 548 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 KCNK6Q9Y257 313 aa12.17□□□□□ -0.46
LDLR-207ENST00000558013 GPR55Q9Y2T6 319 aaPredicted RBP12.17□□□□□ -0.46
LDLR-207ENST00000558013 LTBP2Q14767 1821 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 MPZL2O60487 215 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 CH25HO95992 272 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 SSR2P43308 183 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 CSNK1G2P78368 415 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 CDK3Q00526 305 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 INSL4Q14641 139 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 KIF18BQ86Y91 864 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 SHISA5Q8N114 240 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 NANOGP1Q8N7R0 232 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 ZNF557Q8N988 423 aaPredicted RBP12.16□□□□□ -0.46
LDLR-207ENST00000558013 OR52I1Q8NGK6 324 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 CXorf40AQ8TE69 158 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 DOK4Q8TEW6 326 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 GATAD2BQ8WXI9 593 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 DYRK4Q9NR20 520 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 CNIH4Q9P003 139 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 DEC1Q9P2X7 70 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 MYO9BQ13459 2157 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 LAMA1P25391 3075 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 ARRDC5A6NEK1 342 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 PDZK1P1A8MUH7 402 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 FAAHO00519 579 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 PCDH8O95206 1070 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 PAK4O96013 591 aaPredicted RBP12.16□□□□□ -0.46
LDLR-207ENST00000558013 MYOGP15173 224 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 TCEA1P23193 301 aaKnown RBP12.16□□□□□ -0.46
LDLR-207ENST00000558013 PSMA1P25786 263 aaKnown RBP12.16□□□□□ -0.46
LDLR-207ENST00000558013 RFX2P48378 723 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 SOX9P48436 509 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 GIPRP48546 466 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 COPZ1P61923 177 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 DAB2P98082 770 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 MFSD4BQ5TF39 518 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 METRNLQ641Q3 311 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 C18orf63Q68DL7 685 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 NUDT13Q86X67 352 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 OR8J1Q8NGP2 316 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 HCAR2Q8TDS4 363 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 ZBED6CLQ96FA7 236 aaPredicted RBP12.16□□□□□ -0.46
LDLR-207ENST00000558013 ZNF514Q96K75 400 aaPredicted RBP12.16□□□□□ -0.46
LDLR-207ENST00000558013 FERD3LQ96RJ6 166 aa12.16□□□□□ -0.46
LDLR-207ENST00000558013 INSM2Q96T92 566 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms