RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 EHD3Q9NZN3 535 aa12.68□□□□□ -0.38
SHMT2-219ENST00000555563 SEC14L3Q9UDX4 400 aa12.68□□□□□ -0.38
SHMT2-219ENST00000555563 ENTPD4Q9Y227 616 aa12.68□□□□□ -0.38
SHMT2-219ENST00000555563 OSGIN2Q9Y236 505 aa12.68□□□□□ -0.38
SHMT2-219ENST00000555563 TRAF6Q9Y4K3 522 aa12.68□□□□□ -0.38
SHMT2-219ENST00000555563 ACTL7BQ9Y614 415 aa12.68□□□□□ -0.38
SHMT2-219ENST00000555563 C2orf92A0A1B0GVN3 265 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 WDR91A4D1P6 747 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 NPIPA5E9PKD4 350 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 G3V3Y1 287 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 KLRC4-KLRK1H3BQV0 150 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 PIP5K1BO14986 540 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 LSM1O15116 133 aaKnown RBP12.67□□□□□ -0.38
SHMT2-219ENST00000555563 SEC22BO75396 215 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 FGF4P08620 206 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 MYZAPP0CAP1 466 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 CCL3P10147 92 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 PCSK2P16519 638 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 DDCP20711 480 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 S1PR1P21453 382 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 RPL38P63173 70 aaKnown RBP12.67□□□□□ -0.38
SHMT2-219ENST00000555563 MRPS35P82673 323 aaKnown RBP12.67□□□□□ -0.38
SHMT2-219ENST00000555563 MAP4K2Q12851 820 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 MPP2Q14168 576 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 EXOSC7Q15024 291 aaKnown RBP12.67□□□□□ -0.38
SHMT2-219ENST00000555563 KIAA0040Q15053 153 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 ZNF791Q3KP31 576 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-219ENST00000555563 UGT3A2Q3SY77 523 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 FAM71E1Q6IPT2 247 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 Q6ZSR9 355 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 TICAM1Q8IUC6 712 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 NUDCD3Q8IVD9 361 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 SIAH3Q8IW03 269 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 CLYBLQ8N0X4 340 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 SLC15A4Q8N697 577 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 POGLUT1Q8NBL1 392 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 SIMC1Q8NDZ2 872 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 OR7G1Q8NGA0 311 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 OR9A2Q8NGT5 310 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 C16orf52Q8NHV5 167 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 PPP1R14CQ8TAE6 165 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.67□□□□□ -0.38
SHMT2-219ENST00000555563 ZNF675Q8TD23 568 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 CTHRC1Q96CG8 243 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 SPACA9Q96E40 222 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-219ENST00000555563 METTL2AQ96IZ6 378 aaKnown RBP12.67□□□□□ -0.38
SHMT2-219ENST00000555563 FCRL1Q96LA6 429 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 GPR137Q96N19 417 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 MIEF1Q9NQG6 463 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 SLC35C2Q9NQQ7 365 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 GIMAP4Q9NUV9 329 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 ZNF639Q9UID6 485 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 ERRFI1Q9UJM3 462 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-219ENST00000555563 NPIPA1Q9UND3 350 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 EXO1Q9UQ84 846 aaKnown RBP12.67□□□□□ -0.38
SHMT2-219ENST00000555563 DTX4Q9Y2E6 619 aa12.67□□□□□ -0.38
SHMT2-219ENST00000555563 PINLYPA6NC86 204 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 SKAP2O75563 359 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-219ENST00000555563 LYPLA1O75608 230 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-219ENST00000555563 ZWINTO95229 277 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 CBX7O95931 251 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 SERPINE1P05121 402 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 FBXO45P0C2W1 286 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 DHRS4L1P0CG22 281 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 GPX3P22352 226 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 TACR1P25103 407 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 NR0B1P51843 470 aaKnown RBP12.66□□□□□ -0.38
SHMT2-219ENST00000555563 C2orf80Q0P641 193 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 CEBPEQ15744 281 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 CHI3L2Q15782 390 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 PRSS53Q2L4Q9 553 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 TRMT12Q53H54 448 aaKnown RBP12.66□□□□□ -0.38
SHMT2-219ENST00000555563 ZNF628Q5EBL2 1059 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 XKR7Q5GH72 579 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 HLA-DQA1Q5Y7H0 255 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 TMEM64Q6YI46 380 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 IKBIPQ70UQ0 350 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 CCDC116Q8IYX3 515 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 SAMD14Q8IZD0 417 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-219ENST00000555563 ZFP62Q8NB50 900 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-219ENST00000555563 OR52R1Q8NGF1 315 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 ADIPOR1Q96A54 375 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 SGCZQ96LD1 299 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 CCT7Q99832 543 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 SH2D2AQ9NP31 389 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 KCNK9Q9NPC2 374 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 BCAP29Q9UHQ4 241 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 ZDHHC2Q9UIJ5 367 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 SLC5A6Q9Y289 635 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 SVILO95425 2214 aa12.66□□□□□ -0.38
SHMT2-219ENST00000555563 TFECO14948 347 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-219ENST00000555563 BIRC5O15392 142 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 HSPA4LO95757 839 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 STSP08842 583 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 SDC1P18827 310 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 HSF1Q00613 529 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 NNATQ16517 81 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 GALNTL6Q49A17 601 aa12.65□□□□□ -0.38
SHMT2-219ENST00000555563 RFTN2Q52LD8 501 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-219ENST00000555563 C4orf17Q53FE4 359 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms