RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 MLC1Q15049 377 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 NANOGP8Q6NSW7 305 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 PGM2L1Q6PCE3 622 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 DNAJC14Q6Y2X3 702 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-208ENST00000553868 ZNF621Q6ZSS3 439 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 PDSS2Q86YH6 399 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 CA13Q8N1Q1 262 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 AGBL5Q8NDL9 886 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 OR9A4Q8NGU2 314 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 OR1L3Q8NH93 324 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 GOT1L1Q8NHS2 421 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-208ENST00000553868 DNAJB14Q8TBM8 379 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 TANKQ92844 425 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 UTP4Q969X6 686 aaKnown RBP13.57□□□□□ -0.24
SHMT2-208ENST00000553868 ZNF501Q96CX3 271 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-208ENST00000553868 C5orf34Q96MH7 638 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 ANKRD27Q96NW4 1050 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 SPRY4Q9C004 299 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 SLC7A5P2Q9GIP4 190 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 RPF2Q9H7B2 306 aaKnown RBP13.57□□□□□ -0.24
SHMT2-208ENST00000553868 NANOGQ9H9S0 305 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 TAS2R9Q9NYW1 312 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 ABCD2Q9UBJ2 740 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 RARRES3Q9UL19 164 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 CORO2BQ9UQ03 480 aa13.57□□□□□ -0.24
SHMT2-208ENST00000553868 MDC1Q14676 2089 aaKnown RBP13.57□□□□□ -0.24
SHMT2-208ENST00000553868 ZNF860A6NHJ4 632 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 DSCR3O14972 297 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 CHST10O43529 356 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 FOXS1O43638 330 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 RDH16O75452 317 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 HBQ1P09105 142 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 CSNK2A2P19784 350 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-208ENST00000553868 MPIP34949 423 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 FRKP42685 505 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-208ENST00000553868 MANFP55145 182 aaKnown RBP13.56□□□□□ -0.24
SHMT2-208ENST00000553868 ERV3-1Q14264 604 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 RUNDC3AQ59EK9 446 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 PIGGQ5H8A4 983 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 C18orf63Q68DL7 685 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 PRSS41Q7RTY9 318 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 SLC15A3Q8IY34 581 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 C10orf67Q8IYJ2 551 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 CLECL1Q8IZS7 167 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 MMP21Q8N119 569 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 C7orf57Q8NEG2 295 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 TMEM125Q96AQ2 219 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 CIDECQ96AQ7 238 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-208ENST00000553868 MIEF2Q96C03 454 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 MMABQ96EY8 250 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-208ENST00000553868 SLC39A3Q9BRY0 314 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 INPP5KQ9BT40 448 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 THUMPD3Q9BV44 507 aaKnown RBP13.56□□□□□ -0.24
SHMT2-208ENST00000553868 RAD21L1Q9H4I0 556 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 VAPAQ9P0L0 249 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 SLC5A6Q9Y289 635 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 ABCA2Q9BZC7 2435 aa13.56□□□□□ -0.24
SHMT2-208ENST00000553868 DIDO1Q9BTC0 2240 aaKnown RBP13.56□□□□□ -0.24
SHMT2-208ENST00000553868 TRBV5-3A0A0A0MS03 114 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 H3BMH7 237 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 CLDN4O14493 209 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 ERAL1O75616 437 aaKnown RBP13.55□□□□□ -0.24
SHMT2-208ENST00000553868 PDE5AO76074 875 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 C6orf47O95873 294 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 CTSBP07858 339 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 IL10P22301 178 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 OLR1P78380 273 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 BNIP2Q12982 314 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 IL11RAQ14626 422 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 DCAF12Q5T6F0 453 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 C1orf146Q5VVC0 180 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 TTLL10Q6ZVT0 673 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 NET1Q7Z628 596 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-208ENST00000553868 FAM13CQ8NE31 585 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 TNIP2Q8NFZ5 429 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 OR4K14Q8NGD5 310 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 CLPTM1LQ96KA5 538 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 OR6C1Q96RD1 312 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 ECSITQ9BQ95 431 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 CPPED1Q9BRF8 314 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-208ENST00000553868 MUC13Q9H3R2 512 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 SEMA3GQ9NS98 782 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 SIDT1Q9NXL6 827 aaKnown RBP13.55□□□□□ -0.24
SHMT2-208ENST00000553868 SLAMF8Q9P0V8 285 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 SUCOQ9UBS9 1254 aaKnown RBP13.55□□□□□ -0.24
SHMT2-208ENST00000553868 NDOR1Q9UHB4 597 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 SLC7A8Q9UHI5 535 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 CES1P1Q9UKY3 287 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 PCDHB14Q9Y5E9 798 aa13.55□□□□□ -0.24
SHMT2-208ENST00000553868 A0A1B0GX78 115 aa13.54□□□□□ -0.24
SHMT2-208ENST00000553868 GLOD5A6NK44 160 aa13.54□□□□□ -0.24
SHMT2-208ENST00000553868 MYO1GB0I1T2 1018 aa13.54□□□□□ -0.24
SHMT2-208ENST00000553868 CLIC1O00299 241 aa13.54□□□□□ -0.24
SHMT2-208ENST00000553868 CYR61O00622 381 aa13.54□□□□□ -0.24
SHMT2-208ENST00000553868 NME4O00746 187 aa13.54□□□□□ -0.24
SHMT2-208ENST00000553868 PGRMC2O15173 223 aa13.54□□□□□ -0.24
SHMT2-208ENST00000553868 ZNF749O43361 778 aa13.54□□□□□ -0.24
SHMT2-208ENST00000553868 KRT75O95678 551 aa13.54□□□□□ -0.24
SHMT2-208ENST00000553868 GSNP06396 782 aa13.54□□□□□ -0.24
SHMT2-208ENST00000553868 HSD17B1P14061 328 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms