RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PROS1P07225 676 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 LIMS1P48059 325 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 CXCL12P48061 93 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 SIM1P81133 766 aaPredicted RBP24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 IL1RL1Q01638 556 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 CD47Q08722 323 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 OGFOD3Q6PK18 319 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 RBM44Q6ZP01 1051 aaKnown RBP24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 OR10G2Q8NGC3 310 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 DNASE2BQ8WZ79 361 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 OR7D2Q96RA2 312 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 FAM60AQ9NP50 221 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 ACER3Q9NUN7 267 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 SEC14L3Q9UDX4 400 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 KCND3Q9UK17 655 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 A0A0G2JPF8 293 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 HNRNPCL2B2RXH8 293 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 HNRNPCL3B7ZW38 293 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 LMO7DNF2Z398 122 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 HNRNPCL4P0DMR1 293 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 YAP1P46937 504 aaKnown RBP24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 CAPZBP47756 277 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 MAN2A2P49641 1150 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 CLK3P49761 638 aaKnown RBP24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 LTB4RQ15722 352 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 EXOC3L2Q2M3D2 409 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 C16orf58Q96GQ5 468 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 SLC38A3Q99624 504 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 GABARAPL3Q9BY60 117 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 ACTRT3Q9BYD9 372 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 IL21RQ9HBE5 538 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 LIPT1Q9Y234 373 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 NAALAD2Q9Y3Q0 740 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 TDRD6O60522 2096 aaKnown RBP24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 GIMAP1-GIMAP5A0A087WTJ2 511 aa24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 J3KTA2 159 aa24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 K7ESF4 209 aa24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 CPMP14384 443 aa24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 FUT5Q11128 374 aa24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 MCATQ8IVS2 390 aaKnown RBP24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 CA13Q8N1Q1 262 aa24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 KAT2AQ92830 837 aa24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 EDAQ92838 391 aa24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 GIMAP5Q96F15 307 aa24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 PITX2Q99697 317 aa24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 YIPF4Q9BSR8 244 aa24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 CALML5Q9NZT1 146 aa24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 PTGFRNQ9P2B2 879 aa24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 BLOC1S6Q9UL45 172 aa24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 NDRG4Q9ULP0 352 aaKnown RBP24.74■■□□□ 1.55
CCDC88C-205ENST00000553403 ARRDC5A6NEK1 342 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 ZNF860A6NHJ4 632 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 SRPX2O60687 465 aaPredicted RBP24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 GADD45GO95257 159 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 CHRM4P08173 479 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 PORP16435 677 aaPredicted RBP24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 BCKDHBP21953 392 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 CRHBPP24387 322 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 GABARAPL2P60520 117 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 OLR1P78380 273 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 RAPSNQ13702 412 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 MEP1AQ16819 746 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 CTU2Q2VPK5 515 aaKnown RBP24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 PRSS41Q7RTY9 318 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 DNAJC22Q8N4W6 341 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 MS4A4EQ96PG1 132 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 TSC22D3Q99576 134 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 FEVQ99581 238 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 APOL4Q9BPW4 351 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 IER2Q9BTL4 223 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 RSPO3Q9BXY4 272 aaPredicted RBP24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 GMPPBQ9Y5P6 360 aa24.73■■□□□ 1.55
CCDC88C-205ENST00000553403 SLC9B1P1A6NJY1 282 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 CYR61O00622 381 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 IFI6P09912 130 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 NPRL3Q12980 569 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 PRTGQ2VWP7 1150 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 ZNF773Q6PK81 442 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 ARHGEF39Q8N4T4 335 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 SLC5A8Q8N695 610 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 TANKQ92844 425 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 TCTN2Q96GX1 697 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 TMEM74BQ9NUR3 256 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 GOLGA4Q13439 2230 aaKnown RBP24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 DUXAA6NLW8 204 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 SLITRK5O94991 958 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 IL7RP16871 459 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 RAB38P57729 211 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 ESRRGP62508 458 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 ATAD3BQ5T9A4 648 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 TSPYL5Q86VY4 417 aaPredicted RBP24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 OR2L13Q8N349 312 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 OR7G2Q8NG99 324 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 OR52J3Q8NH60 311 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 NCSTNQ92542 709 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 DHRS1Q96LJ7 313 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 TRNT1Q96Q11 434 aaKnown RBP24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 DUSP15Q9H1R2 295 aaPredicted RBP24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 ADNPQ9H2P0 1102 aa24.72■■□□□ 1.55
CCDC88C-205ENST00000553403 ANKHQ9HCJ1 492 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms