RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 MYO1GB0I1T2 1018 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 SDHDO14521 159 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 HDAC3O15379 428 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 ZNF354AO60765 605 aaPredicted RBP13.08□□□□□ -0.32
PTCH1-226ENST00000553011 CBX7O95931 251 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 PRPS2P11908 318 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 PCSK2P16519 638 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 TRHRP34981 398 aaPredicted RBP13.08□□□□□ -0.32
PTCH1-226ENST00000553011 ASMTP46597 345 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 SSR4P51571 173 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 TLE1Q04724 770 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 EMX2Q04743 252 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 DUSP8Q13202 625 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 EBPQ15125 230 aaKnown RBP13.08□□□□□ -0.32
PTCH1-226ENST00000553011 ZNF628Q5EBL2 1059 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 ZNF227Q86WZ6 799 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 SAMD14Q8IZD0 417 aaPredicted RBP13.08□□□□□ -0.32
PTCH1-226ENST00000553011 TMEM156Q8N614 296 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 ZNF615Q8N8J6 731 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 MDS2Q8NDY4 140 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 OR5L2Q8NGL0 311 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 NUBPLQ8TB37 319 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 ZNF675Q8TD23 568 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 NUDT8Q8WV74 236 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 PPCDCQ96CD2 204 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 CTHRC1Q96CG8 243 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 RASL10BQ96S79 203 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 HES7Q9BYE0 225 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 WWTR1Q9GZV5 400 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 OR10A5Q9H207 317 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 ANKRA2Q9H9E1 313 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 SLCO1B3Q9NPD5 702 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.08□□□□□ -0.32
PTCH1-226ENST00000553011 LRFN1Q9P244 771 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 ZNF639Q9UID6 485 aa13.08□□□□□ -0.32
PTCH1-226ENST00000553011 YARS2Q9Y2Z4 477 aaKnown RBP13.08□□□□□ -0.32
PTCH1-226ENST00000553011 HIVEP3Q5T1R4 2406 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 GOLGA8QA0A0J9YX86 632 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 GOLGA8OA6NCC3 632 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 GOLGA8NF8WBI6 632 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 PYCARD-AS1I3L0S3 204 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 PDPK1O15530 556 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 TBX19O60806 448 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 PRAMEF2O60811 474 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 NEURL1O76050 574 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 OR6B1O95007 311 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 NADKO95544 446 aaPredicted RBP13.07□□□□□ -0.32
PTCH1-226ENST00000553011 G6PDP11413 515 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 NTSP30990 170 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 MPIP34949 423 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 SOX3P41225 446 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 CYB561P49447 251 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 HLCSP50747 726 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 NCBP2P52298 156 aaKnown RBP eCLIP13.07□□□□□ -0.32
PTCH1-226ENST00000553011 DIO3P55073 304 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 PDE7AQ13946 482 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 INPP5JQ15735 1006 aaPredicted RBP13.07□□□□□ -0.32
PTCH1-226ENST00000553011 MPEG1Q2M385 716 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 SMU1Q2TAY7 513 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 ZNF766Q5HY98 468 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 LARP4Q71RC2 724 aaKnown RBP eCLIP13.07□□□□□ -0.32
PTCH1-226ENST00000553011 SLC29A4Q7RTT9 530 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 MAVSQ7Z434 540 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 FAM9CQ8IZT9 166 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 CISD2Q8N5K1 135 aaKnown RBP13.07□□□□□ -0.32
PTCH1-226ENST00000553011 KRTCAP2Q8N6L1 136 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 OR7G1Q8NGA0 311 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 OR7A2PQ8NGA2 310 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 C16orf52Q8NHV5 167 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 CIDECQ96AQ7 238 aaPredicted RBP13.07□□□□□ -0.32
PTCH1-226ENST00000553011 ZNF764Q96H86 408 aaPredicted RBP13.07□□□□□ -0.32
PTCH1-226ENST00000553011 GLIPR2Q9H4G4 154 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 WDR55Q9H6Y2 383 aaPredicted RBP13.07□□□□□ -0.32
PTCH1-226ENST00000553011 KLHL1Q9NR64 748 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 NOP53Q9NZM5 478 aaKnown RBP13.07□□□□□ -0.32
PTCH1-226ENST00000553011 SH3BP4Q9P0V3 963 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 BCAP29Q9UHQ4 241 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 EIF3LQ9Y262 564 aaKnown RBP13.07□□□□□ -0.32
PTCH1-226ENST00000553011 DTX4Q9Y2E6 619 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 NTNG1Q9Y2I2 539 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 FREM3P0C091 2139 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 DNAJC13O75165 2243 aa13.07□□□□□ -0.32
PTCH1-226ENST00000553011 POLEQ07864 2286 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 C2orf92A0A1B0GVN3 265 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 OR6C76A6NM76 312 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 SCAMP2O15127 329 aaKnown RBP13.06□□□□□ -0.32
PTCH1-226ENST00000553011 NME6O75414 186 aaPredicted RBP13.06□□□□□ -0.32
PTCH1-226ENST00000553011 SLC25A12O75746 678 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 PLA2G2AP14555 144 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 LBPP18428 481 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 EFNA1P20827 205 aaPredicted RBP13.06□□□□□ -0.32
PTCH1-226ENST00000553011 EPHA3P29320 983 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 HPCAL1P37235 193 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 MAD2L1Q13257 205 aaPredicted RBP13.06□□□□□ -0.32
PTCH1-226ENST00000553011 PIGGQ5H8A4 983 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 ZNF551Q7Z340 670 aaPredicted RBP13.06□□□□□ -0.32
PTCH1-226ENST00000553011 CYP4Z2PQ8N1L4 340 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 ZNF441Q8N8Z8 693 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 OR7G2Q8NG99 324 aa13.06□□□□□ -0.32
PTCH1-226ENST00000553011 OR52R1Q8NGF1 315 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms