RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 ZNF717Q9BY31 904 aaPredicted RBP12.99□□□□□ -0.33
VPS33A-208ENST00000543633 NT5DC2Q9H857 520 aa12.99□□□□□ -0.33
VPS33A-208ENST00000543633 BCL2L10Q9HD36 194 aa12.99□□□□□ -0.33
VPS33A-208ENST00000543633 SLAMF7Q9NQ25 335 aa12.99□□□□□ -0.33
VPS33A-208ENST00000543633 TVP23BQ9NYZ1 205 aa12.99□□□□□ -0.33
VPS33A-208ENST00000543633 ASB4Q9Y574 426 aa12.99□□□□□ -0.33
VPS33A-208ENST00000543633 PCDHGB7Q9Y5F8 929 aa12.99□□□□□ -0.33
VPS33A-208ENST00000543633 SPIN1Q9Y657 262 aaPredicted RBP12.99□□□□□ -0.33
VPS33A-208ENST00000543633 LAMA2P24043 3122 aaKnown RBP12.99□□□□□ -0.33
VPS33A-208ENST00000543633 NEDD8-MDP1E9PL57 170 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 SH3BP5O60239 455 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 CLTBP09497 229 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 ERGP11308 486 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 KELP23276 732 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 ITGB8P26012 769 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 DDX6P26196 483 aaKnown RBP eCLIP12.98□□□□□ -0.33
VPS33A-208ENST00000543633 ACADLP28330 430 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 ETV5P41161 510 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 MAP2K3P46734 347 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 GIPRP48546 466 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 ETV1P50549 477 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 ANXA11P50995 505 aaKnown RBP12.98□□□□□ -0.33
VPS33A-208ENST00000543633 GNG2P59768 71 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 TRA2BP62995 288 aaKnown RBP12.98□□□□□ -0.33
VPS33A-208ENST00000543633 ARHGAP19Q14CB8 494 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 TAB1Q15750 504 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 SPDYE7PQ495Y7 208 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 PODNL1Q6PEZ8 512 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 FAM83HQ6ZRV2 1179 aaPredicted RBP12.98□□□□□ -0.33
VPS33A-208ENST00000543633 PLCZ1Q86YW0 608 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 CFAP206Q8IYR0 622 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 GJD3Q8N144 294 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 DUSP18Q8NEJ0 188 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 TM4SF18Q96CE8 201 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 LRR1Q96L50 414 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 PRRC1Q96M27 445 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 KATNB1Q9BVA0 655 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 SLC46A2Q9BY10 475 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 WASH6PQ9NQA3 447 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 TMEM39AQ9NV64 488 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 PAQR5Q9NXK6 330 aaPredicted RBP12.98□□□□□ -0.33
VPS33A-208ENST00000543633 TAS2R7Q9NYW3 318 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 TRDV1A0A1B0GX56 115 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 A0A1W2PRU2 124 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 WWP2O00308 870 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 CASC3O15234 703 aaKnown RBP12.98□□□□□ -0.33
VPS33A-208ENST00000543633 TLX2O43763 284 aaPredicted RBP12.98□□□□□ -0.33
VPS33A-208ENST00000543633 SLC28A2O43868 658 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 LILRB3O75022 631 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 IGFBP1P08833 259 aaPredicted RBP12.98□□□□□ -0.33
VPS33A-208ENST00000543633 MMP11P24347 488 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 BSGP35613 385 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 TSTA3Q13630 321 aaPredicted RBP12.98□□□□□ -0.33
VPS33A-208ENST00000543633 GNA13Q14344 377 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 GINS1Q14691 196 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 PYDC2Q56P42 97 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 IER5LQ5T953 404 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 PRAMEF8Q5VWM4 474 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 PRAMEF7Q5VXH5 474 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 C22orf42Q6IC83 251 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 PAQR6Q6TCH4 344 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.98□□□□□ -0.33
VPS33A-208ENST00000543633 ZNF438Q7Z4V0 828 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 ADGRF3Q8IZF5 1079 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 OR4K5Q8NGD3 323 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 OR4D11Q8NGI4 311 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 ZFAND1Q8TCF1 268 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 IRF7Q92985 503 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 RAD51AP1Q96B01 352 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 SLC35G5Q96KT7 338 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 AIF1LQ9BQI0 150 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 FNDC11Q9BVV2 318 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 MMP28Q9H239 520 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 ACOXLQ9NUZ1 547 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 GPR34Q9UPC5 381 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 LTBP2Q14767 1821 aa12.98□□□□□ -0.33
VPS33A-208ENST00000543633 TFECO14948 347 aaPredicted RBP12.97□□□□□ -0.33
VPS33A-208ENST00000543633 PLA2G10O15496 165 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 SOD1P00441 154 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 CTSLP07711 333 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 TYRP14679 529 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 TNNI3P19429 210 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 GALP22466 123 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 GPC1P35052 558 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 HSD17B2P37059 387 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 IFNGR2P38484 337 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 KHKP50053 298 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 MEF2AQ02078 507 aaPredicted RBP12.97□□□□□ -0.33
VPS33A-208ENST00000543633 MXD1Q05195 221 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 ACSM1Q08AH1 577 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 RPA4Q13156 261 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 PLET1Q6UQ28 207 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 WDR53Q7Z5U6 358 aaPredicted RBP12.97□□□□□ -0.33
VPS33A-208ENST00000543633 TRAPPC5Q8IUR0 188 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 MMP21Q8N119 569 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 MORN4Q8NDC4 146 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 OR7G1Q8NGA0 311 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 OR2L2Q8NH16 312 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 CHFRQ96EP1 664 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 DMRTB1Q96MA1 342 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms