RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SSPNQ14714 243 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 RPS6KA2Q15349 733 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 ZXDCQ2QGD7 858 aaPredicted RBP4.83□□□□□ -1.64
CLIP1-217ENST00000543205 DEFB110Q30KQ9 67 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 NHSL2Q5HYW2 709 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 SH2D5Q6ZV89 423 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 LRRC70Q7Z2Q7 622 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 ATG4DQ86TL0 474 aaPredicted RBP4.83□□□□□ -1.64
CLIP1-217ENST00000543205 PAQR7Q86WK9 346 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 TMEM126BQ8IUX1 230 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 SLC22A9Q8IVM8 553 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 KLHDC8AQ8IYD2 350 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 GPR135Q8IZ08 494 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 Q8N1Y9 231 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 DNAJC22Q8N4W6 341 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 PTGR2Q8N8N7 351 aaPredicted RBP4.83□□□□□ -1.64
CLIP1-217ENST00000543205 BMPERQ8N8U9 685 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 BANPQ8N9N5 519 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 PPP4R1Q8TF05 950 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 UBTD2Q8WUN7 234 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 NEIL2Q969S2 332 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 RERGQ96A58 199 aaPredicted RBP4.83□□□□□ -1.64
CLIP1-217ENST00000543205 ELP4Q96EB1 424 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 PGM2Q96G03 612 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 PRR11Q96HE9 360 aaPredicted RBP4.83□□□□□ -1.64
CLIP1-217ENST00000543205 OR4K3Q96R72 315 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 SELENOSQ9BQE4 189 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 B3GNT4Q9C0J1 378 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 SLC7A5P2Q9GIP4 190 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 RNF32Q9H0A6 362 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 PELI2Q9HAT8 420 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 APMAPQ9HDC9 416 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 SEMA4BQ9NPR2 832 aaPredicted RBP4.83□□□□□ -1.64
CLIP1-217ENST00000543205 SLC35C2Q9NQQ7 365 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 SH3BP4Q9P0V3 963 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 SH2B3Q9UQQ2 575 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 PTRH2Q9Y3E5 179 aaKnown RBP4.83□□□□□ -1.64
CLIP1-217ENST00000543205 N6AMT1Q9Y5N5 214 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 SESN1Q9Y6P5 492 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 ASPMQ8IZT6 3477 aa4.83□□□□□ -1.64
CLIP1-217ENST00000543205 FRYQ5TBA9 3013 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 ARPC4-TTLL3A0A0A6YYG9 625 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 OR2A25A4D2G3 310 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 A8MT66 165 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 NOTOA8MTQ0 251 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 FAM171A2A8MVW0 826 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 E7EQ34 232 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 HAT1O14929 419 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 NVLO15381 856 aaKnown RBP4.82□□□□□ -1.64
CLIP1-217ENST00000543205 PLIN3O60664 434 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 SRPX2O60687 465 aaPredicted RBP4.82□□□□□ -1.64
CLIP1-217ENST00000543205 CTSVO60911 334 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 TSC22D2O75157 780 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 SPAG7O75391 227 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 SCRG1O75711 98 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 OR2B3O76000 313 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 EIF2S1P05198 315 aaKnown RBP4.82□□□□□ -1.64
CLIP1-217ENST00000543205 MSL3P1P0C860 447 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 PRR35P0CG20 571 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 C1GALT1C1LP0DN25 315 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 CPA3P15088 417 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 CXCR2P25025 360 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 TACR1P25103 407 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 CD82P27701 267 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 ARL1P40616 181 aaPredicted RBP4.82□□□□□ -1.64
CLIP1-217ENST00000543205 KCNJ5P48544 419 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 PIK3CGP48736 1102 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 CAMLGP49069 296 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 NPY4RP50391 375 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 LUMP51884 338 aaPredicted RBP4.82□□□□□ -1.64
CLIP1-217ENST00000543205 CORO7P57737 925 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 VSX2P58304 361 aaPredicted RBP4.82□□□□□ -1.64
CLIP1-217ENST00000543205 ERVPABLB-1P60509 514 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 RPS15AP62244 130 aaKnown RBP4.82□□□□□ -1.64
CLIP1-217ENST00000543205 CSNK1G2P78368 415 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 KCNJ10P78508 379 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 MEF2AQ02078 507 aaPredicted RBP4.82□□□□□ -1.64
CLIP1-217ENST00000543205 RELAQ04206 551 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 GTF2H2Q13888 395 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 RBBP5Q15291 538 aaKnown RBP4.82□□□□□ -1.64
CLIP1-217ENST00000543205 HIST2H2ACQ16777 129 aaPredicted RBP4.82□□□□□ -1.64
CLIP1-217ENST00000543205 XKR6Q5GH73 641 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 TCTE1Q5JU00 501 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 ATG9BQ674R7 924 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 HIST2H2AA3Q6FI13 130 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 ZNF425Q6IV72 752 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 GTF2H2CQ6P1K8 395 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 METTL2BQ6P1Q9 378 aaKnown RBP4.82□□□□□ -1.64
CLIP1-217ENST00000543205 FBXO42Q6P3S6 717 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 ZYG11AQ6WRX3 759 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 GOLGA7Q7Z5G4 137 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 TMPRSS11BQ86T26 416 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 NLGN4XQ8N0W4 816 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 SLC15A4Q8N697 577 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 TTC29Q8NA56 475 aaPredicted RBP4.82□□□□□ -1.64
CLIP1-217ENST00000543205 ABHD11Q8NFV4 315 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 OR1L3Q8NH93 324 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 RDH11Q8TC12 318 aa4.82□□□□□ -1.64
CLIP1-217ENST00000543205 ZNF501Q96CX3 271 aaPredicted RBP4.82□□□□□ -1.64
CLIP1-217ENST00000543205 CCDC126Q96EE4 140 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms