RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ZNF780BQ9Y6R6 833 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 LOC105369274A0A096LPK9 316 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 LOC102723532A0A0G2JNH3 316 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 TNFRSF10CO14798 259 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 OR10H3O60404 316 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 SOX14O95416 240 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 IGFBP1P08833 259 aaPredicted RBP15.38■□□□□ 0.05
COL4A1-204ENST00000543140 PVRP15151 417 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 CHMP24386 653 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 ELAVL4P26378 380 aaKnown RBP15.38■□□□□ 0.05
COL4A1-204ENST00000543140 PXNP49023 591 aaPredicted RBP15.38■□□□□ 0.05
COL4A1-204ENST00000543140 CRISP3P54108 245 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 RGS1Q08116 209 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 TGM3Q08188 693 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 SFSWAPQ12872 951 aaKnown RBP15.38■□□□□ 0.05
COL4A1-204ENST00000543140 OR4N5Q8IXE1 308 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 OR4N4Q8N0Y3 316 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 SHISA5Q8N114 240 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 SLC22A18ASQ8N1D0 253 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 IPCEF1Q8WWN9 437 aaPredicted RBP15.38■□□□□ 0.05
COL4A1-204ENST00000543140 SLC22A18Q96BI1 424 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 MMP17Q9ULZ9 603 aa15.38■□□□□ 0.05
COL4A1-204ENST00000543140 SHISA7A6NL88 538 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 H1F0P07305 194 aaKnown RBP15.37■□□□□ 0.05
COL4A1-204ENST00000543140 FHP07954 510 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 CELA2BP08218 269 aaPredicted RBP15.37■□□□□ 0.05
COL4A1-204ENST00000543140 SLC35G6P0C7Q6 338 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 NR2F6P10588 404 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 BUD31P41223 144 aaPredicted RBP15.37■□□□□ 0.05
COL4A1-204ENST00000543140 OLR1P78380 273 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 ILF3Q12906 894 aaKnown RBP eCLIP15.37■□□□□ 0.05
COL4A1-204ENST00000543140 CCINQ13939 588 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 DCST1Q5T197 706 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 ZNF761Q86XN6 746 aaPredicted RBP15.37■□□□□ 0.05
COL4A1-204ENST00000543140 TMEFF1Q8IYR6 380 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 SVOPQ8N4V2 548 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 DNAJC22Q8N4W6 341 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 GAL3ST3Q96A11 431 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 ZNF681Q96N22 645 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 OR2A5Q96R48 311 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 TMEM74BQ9NUR3 256 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 GIMAP4Q9NUV9 329 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 PSORS1C1Q9UIG5 152 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.37■□□□□ 0.05
COL4A1-204ENST00000543140 OR2A25A4D2G3 310 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 A8MVJ9 347 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 EIF2S1P05198 315 aaKnown RBP15.37■□□□□ 0.05
COL4A1-204ENST00000543140 ACVR2AP27037 513 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 MLLT10P55197 1068 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 KIR2DS3Q14952 304 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 SYT6Q5T7P8 510 aaPredicted RBP15.37■□□□□ 0.05
COL4A1-204ENST00000543140 FCRL6Q6DN72 434 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 FRMPD2BQ6IN97 320 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 BHLHB9Q6PI77 547 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 FIGLAQ6QHK4 219 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 TMEM64Q6YI46 380 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 NUP43Q8NFH3 380 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 DOK4Q8TEW6 326 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 RASSF5Q8WWW0 418 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 FAM3CQ92520 227 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 GGHQ92820 318 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 ELP4Q96EB1 424 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 TRNAU1APQ9NX07 287 aaKnown RBP15.37■□□□□ 0.05
COL4A1-204ENST00000543140 ACTR10Q9NZ32 417 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 CYP8B1Q9UNU6 501 aa15.37■□□□□ 0.05
COL4A1-204ENST00000543140 LRP4O75096 1905 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 ZNF860A6NHJ4 632 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 EPPINO95925 133 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 IGHV4-34P06331 123 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 GABRB1P18505 474 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 IGFBP4P22692 258 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 CNR2P34972 360 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 TSFMP43897 325 aaKnown RBP15.36■□□□□ 0.05
COL4A1-204ENST00000543140 ST13P50502 369 aaKnown RBP15.36■□□□□ 0.05
COL4A1-204ENST00000543140 CRISP1P54107 249 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 PRR5P85299 388 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 OR56A1Q8NGH5 318 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 SLC7A13Q8TCU3 470 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 ZG16BQ96DA0 208 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 OR7D2Q96RA2 312 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 SIGLEC11Q96RL6 698 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 PRR14Q9BWN1 585 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 C11orf16Q9NQ32 467 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 TRPV5Q9NQA5 729 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 MTCH2Q9Y6C9 303 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 hCG_2014768A0A024R1R8 64 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 EMC8O43402 210 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 ARFIP1P53367 373 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 CSNK2BP67870 215 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 SIM1P81133 766 aaPredicted RBP15.36■□□□□ 0.05
COL4A1-204ENST00000543140 C6orf132Q5T0Z8 1188 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 DEPDC4Q8N2C3 294 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 SIMC1Q8NDZ2 872 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 OR6T1Q8NGN1 323 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 SFXN5Q8TD22 340 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 YIPF6Q96EC8 236 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 PSD2Q9BQI7 771 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 LYARQ9NX58 379 aaKnown RBP15.36■□□□□ 0.05
COL4A1-204ENST00000543140 MS4A12Q9NXJ0 267 aa15.36■□□□□ 0.05
COL4A1-204ENST00000543140 ANKMY1Q9P2S6 941 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms