RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 TP53BP2Q13625 1128 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 ZNF273Q14593 569 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 SMAD2Q15796 467 aaKnown RBP7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 GPAT3Q53EU6 434 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 ARSIQ5FYB1 569 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 TEX30Q5JUR7 227 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 LIPNQ5VXI9 398 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 PTRHD1Q6GMV3 140 aaKnown RBP7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 ARMC6Q6NXE6 501 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 RAB44Q7Z6P3 723 aaPredicted RBP7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 SYVN1Q86TM6 617 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 GPSM1Q86YR5 675 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 ZNF454Q8N9F8 522 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 WFIKKN2Q8TEU8 576 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 CHAC2Q8WUX2 184 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 TWIST2Q8WVJ9 160 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 SMARCD2Q92925 531 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 UBE2FQ969M7 185 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 EXOSC8Q96B26 276 aaKnown RBP7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 FAM122AQ96E09 287 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 MYOCQ99972 504 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 ZNF251Q9BRH9 671 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 PARD6GQ9BYG4 376 aaPredicted RBP7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 CARS2Q9HA77 564 aaKnown RBP7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 AMBNQ9NP70 447 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 NUDT4Q9NZJ9 180 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 ASH2LQ9UBL3 628 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 IL36AQ9UHA7 158 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 RAPGEFL1Q9UHV5 662 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 RNF6Q9Y252 685 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 ASB4Q9Y574 426 aa7.6□□□□□ -1.19
PDLIM5-221ENST00000542407 A0A1W2PP18 115 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 UPK3BL1B0FP48 263 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 UPK3BL2E5RIL1 263 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 AZIN1O14977 448 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 CAPN5O15484 640 aaPredicted RBP7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 TNFRSF21O75509 655 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 CCNYL3P0C7X3 344 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 LBPP18428 481 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 TNNI3P19429 210 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 CD79BP40259 229 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 ATP4BP51164 291 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 TAS2R60P59551 318 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 GPR50Q13585 617 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 EFR3AQ14156 821 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 PON3Q15166 354 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 C18orf21Q32NC0 220 aaPredicted RBP7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 ZDHHC20Q5W0Z9 365 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 RAET1GQ6H3X3 334 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 BLOC1S3Q6QNY0 202 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 PAMR1Q6UXH9 720 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 PTRH1Q86Y79 214 aaKnown RBP7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 SFTPA1Q8IWL2 248 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 PRSS58Q8IYP2 241 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 ZBTB2Q8N680 514 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 TTC29Q8NA56 475 aaPredicted RBP7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 RNF170Q96K19 258 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 RIPOR3Q96MK2 946 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 ZBTB18Q99592 522 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 TBCDQ9BTW9 1192 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 RACGAP1Q9H0H5 632 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 NKX2-4Q9H2Z4 354 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 ANKHQ9HCJ1 492 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 ELOVL2Q9NXB9 296 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 HSPB11Q9Y547 144 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 PCDHGA1Q9Y5H4 931 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 PNMA8CA0A1B0GUJ8 204 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 H3BQ06 376 aaPredicted RBP7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 SMLR1H3BR10 107 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 DSCR3O14972 297 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 PPM1DO15297 605 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 SLC31A2O15432 143 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 TAPBPO15533 448 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 HPRP00739 348 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 PRR35P0CG20 571 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 JUPP14923 745 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 MMP12P39900 470 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 NSG1P42857 185 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 METAP1P53582 386 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 POLR2LP62875 67 aaKnown RBP7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 PSPHP78330 225 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 SLC35A2P78381 396 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 PRKCDQ05655 676 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 BTN1A1Q13410 526 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 PCBP2Q15366 365 aaKnown RBP eCLIP7.59□□□□□ -1.191e-6■■■■■ 81.2
PDLIM5-221ENST00000542407 EIF2S3LQ2VIR3 472 aaKnown RBP7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 ZNF805Q5CZA5 627 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 HENMT1Q5T8I9 393 aaKnown RBP7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 ANKS6Q68DC2 871 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 LAIR1Q6GTX8 287 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 IGF2-ASQ6U949 168 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 DPPA4Q7L190 304 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 TECPR1Q7Z6L1 1165 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 TMEM179BQ7Z7N9 219 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 NAGSQ8N159 534 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 NUDT8Q8WV74 236 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 GATAD2BQ8WXI9 593 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 SLC7A6Q92536 515 aa7.59□□□□□ -1.19
PDLIM5-221ENST00000542407 SLC38A4Q969I6 547 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms