RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 EPSTI1Q96J88 318 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 CDHR1Q96JP9 859 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 RCHY1Q96PM5 261 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 TAAR6Q96RI8 345 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 TSPAN18Q96SJ8 248 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 ZNF577Q9BSK1 485 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 NUSAP1Q9BXS6 441 aaKnown RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 FTHL17Q9BXU8 183 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 LIME1Q9H400 295 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 RWDD1Q9H446 243 aaPredicted RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 RNF41Q9H4P4 317 aaPredicted RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 TMEM231Q9H6L2 316 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 RPAP3Q9H6T3 665 aaPredicted RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 NT5DC2Q9H857 520 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 SLC25A19Q9HC21 320 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 CYP39A1Q9NYL5 469 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 TRIM10Q9UDY6 481 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 FETUBQ9UGM5 382 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 DIMT1Q9UNQ2 313 aaKnown RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 FBXO7Q9Y3I1 522 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 FKBP7Q9Y680 259 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 DYNC1LI1Q9Y6G9 523 aaKnown RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 STYXL1Q9Y6J8 313 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 GPRASP1Q5JY77 1395 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 SPATA31D1Q6ZQQ2 1576 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 TRABD2BA6NFA1 517 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 E9PAM4 449 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 ANHXE9PGG2 379 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 ARPC1BO15143 372 aaKnown RBP2.19□□□□□ -2.06
CD44-238ENST00000534296 VEGFDO43915 354 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 CSDE1O75534 798 aaKnown RBP2.19□□□□□ -2.06
CD44-238ENST00000534296 STAM2O75886 525 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 TXNDC12O95881 172 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 PDGFBP01127 241 aaPredicted RBP2.19□□□□□ -2.06
CD44-238ENST00000534296 MT-ND1P03886 318 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 ALPPP05187 535 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 FHP07954 510 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 SNRPCP09234 159 aaKnown RBP2.19□□□□□ -2.06
CD44-238ENST00000534296 ALPPL2P10696 532 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 GHRP10912 638 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 GAP43P17677 238 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 AHCYP23526 432 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 MAGEA4P43358 317 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 ZNF131P52739 623 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 OSTNP61366 133 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 MYBPC1Q00872 1141 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 PDK1Q15118 436 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 TMEM44Q2T9K0 475 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 HFEQ30201 348 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 RNLSQ5VYX0 342 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 NEPROQ6NW34 567 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 STEAP1BQ6NZ63 245 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 ARMCX5Q6P1M9 558 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 EMBQ6PCB8 327 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 DLEU7Q6UYE1 221 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 RBM43Q6ZSC3 357 aaKnown RBP2.19□□□□□ -2.06
CD44-238ENST00000534296 TIPARPQ7Z3E1 657 aaKnown RBP2.19□□□□□ -2.06
CD44-238ENST00000534296 NUFIP2Q7Z417 695 aaKnown RBP2.19□□□□□ -2.06
CD44-238ENST00000534296 BNIPLQ7Z465 357 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 TSEN54Q7Z6J9 526 aaKnown RBP2.19□□□□□ -2.06
CD44-238ENST00000534296 VPS36Q86VN1 386 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 GPBP1Q86WP2 473 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 CNTN4Q8IWV2 1026 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 HDDC3Q8N4P3 179 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 CSNK1G2-AS1Q8NCQ2 148 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 CCDC110Q8TBZ0 833 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 RNASE8Q8TDE3 154 aaKnown RBP2.19□□□□□ -2.06
CD44-238ENST00000534296 AGAP11Q8TF27 550 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 TMEM37Q8WXS4 190 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 PHYHIPQ92561 330 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 PNPLA2Q96AD5 504 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 SLCO4A1Q96BD0 722 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 PINX1Q96BK5 328 aaKnown RBP2.19□□□□□ -2.06
CD44-238ENST00000534296 TADA1Q96BN2 335 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 SERAC1Q96JX3 654 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 COQ7Q99807 217 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 HSD17B14Q9BPX1 270 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 C19orf43Q9BQ61 176 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 KRT23Q9C075 422 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 RAB17Q9H0T7 212 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 C1orf21Q9H246 121 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 FNDC4Q9H6D8 234 aaPredicted RBP2.19□□□□□ -2.06
CD44-238ENST00000534296 POLD4Q9HCU8 107 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 IL1RAPQ9NPH3 570 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 ABCC13Q9NSE7 274 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 TECRQ9NZ01 308 aaKnown RBP2.19□□□□□ -2.06
CD44-238ENST00000534296 SENP1Q9P0U3 644 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 TUBGCP4Q9UGJ1 667 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 SLC6A5Q9Y345 797 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 MRPL11Q9Y3B7 192 aaKnown RBP2.19□□□□□ -2.06
CD44-238ENST00000534296 KIF3AQ9Y496 699 aa2.19□□□□□ -2.06
CD44-238ENST00000534296 AGRNO00468 2067 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 NPIPA5A0A0B4J1W7 369 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 TEX48A0A1B0GUV7 120 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 NPIPA5E9PKD4 350 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 CYB561D2O14569 222 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 SH2D1BO14796 132 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 PHOX2AO14813 284 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 LRRTM2O43300 516 aa2.18□□□□□ -2.06
CD44-238ENST00000534296 BUB1O43683 1085 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms