RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SDC1P18827 310 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 S1PR1P21453 382 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 NT5EP21589 574 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 NME2P22392 152 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 SSTR4P31391 388 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 SLC1A6P48664 564 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 MGAT2Q10469 447 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 MAP4K2Q12851 820 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 GALNTL6Q49A17 601 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 SLC25A25Q6KCM7 469 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 ZNF781Q8N8C0 355 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 ZNF675Q8TD23 568 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 FAR1Q8WVX9 515 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 TMEM125Q96AQ2 219 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 CTHRC1Q96CG8 243 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 ZNF764Q96H86 408 aaPredicted RBP13.93□□□□□ -0.18
CPSF1-208ENST00000532560 PPP3R2Q96LZ3 170 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 SORT1Q99523 831 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 PAIP2Q9BPZ3 127 aaKnown RBP13.93□□□□□ -0.18
CPSF1-208ENST00000532560 SLX1AQ9BQ83 275 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 HES7Q9BYE0 225 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 WWTR1Q9GZV5 400 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 CCDC134Q9H6E4 229 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 MIEF1Q9NQG6 463 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 PFDN4Q9NQP4 134 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 SLC35C2Q9NQQ7 365 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 KLHL1Q9NR64 748 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 HPF1Q9NWY4 346 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 NKIRAS1Q9NYS0 192 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 MAT2BQ9NZL9 334 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 ZNF639Q9UID6 485 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 VPS4AQ9UN37 437 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 RAP2CQ9Y3L5 183 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 ASPDHA6ND91 283 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 SKAP2O75563 359 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-208ENST00000532560 OR6B1O95007 311 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 CRYABP02511 175 aaKnown RBP13.92□□□□□ -0.18
CPSF1-208ENST00000532560 SP1P08047 785 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 TACR1P25103 407 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 SOX3P41225 446 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 KCNC4Q03721 635 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 C2orf80Q0P641 193 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 BST1Q10588 318 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 STX3Q13277 289 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 RFTN2Q52LD8 501 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-208ENST00000532560 ZNF628Q5EBL2 1059 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 PIGGQ5H8A4 983 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 ZNF324BQ6AW86 544 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-208ENST00000532560 FAM180BQ6P0A1 224 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 OPN5Q6U736 354 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 TICAM1Q8IUC6 712 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 SLC15A4Q8N697 577 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 ZNF615Q8N8J6 731 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 ZNF441Q8N8Z8 693 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 C17orf47Q8NEP4 570 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 DNAJB8Q8NHS0 232 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 RAB3IL1Q8TBN0 382 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 SLC22A8Q8TCC7 542 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 ERP27Q96DN0 273 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 C3orf30Q96M34 536 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 GAL3ST4Q96RP7 486 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 BRINP2Q9C0B6 783 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 C20orf27Q9GZN8 174 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 OR10A5Q9H207 317 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 ZNF395Q9H8N7 513 aaPredicted RBP13.92□□□□□ -0.18
CPSF1-208ENST00000532560 OLAHQ9NV23 265 aa13.92□□□□□ -0.18
CPSF1-208ENST00000532560 EXO1Q9UQ84 846 aaKnown RBP13.92□□□□□ -0.18
CPSF1-208ENST00000532560 MYO1GB0I1T2 1018 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 TCP11X1B4DZS4 312 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 ZNF354AO60765 605 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-208ENST00000532560 NADKO95544 446 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-208ENST00000532560 MAPK1P28482 360 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 SOX18P35713 384 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 UQCRFS1P47985 274 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 RPL14P50914 215 aaKnown RBP13.91□□□□□ -0.18
CPSF1-208ENST00000532560 LTB4RQ15722 352 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 MAPKAPK3Q16644 382 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 ATP6AP1LQ52LC2 224 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 FAM111BQ6SJ93 734 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 GALNTL5Q7Z4T8 443 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 DND1Q8IYX4 353 aaKnown RBP13.91□□□□□ -0.18
CPSF1-208ENST00000532560 FAM98AQ8NCA5 519 aaKnown RBP13.91□□□□□ -0.18
CPSF1-208ENST00000532560 ST6GALNAC3Q8NDV1 305 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 ADCY4Q8NFM4 1077 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 MGARPQ8TDB4 240 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 NR4A3Q92570 626 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 EGLN2Q96KS0 407 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 CLMPQ9H6B4 373 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 TIMMDC1Q9NPL8 285 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 ERVK-11Q9UQG0 969 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 CFL2Q9Y281 166 aa13.91□□□□□ -0.18
CPSF1-208ENST00000532560 KLF13Q9Y2Y9 288 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-208ENST00000532560 UBR5O95071 2799 aaPredicted RBP13.91□□□□□ -0.18
CPSF1-208ENST00000532560 C2orf92A0A1B0GVN3 265 aa13.9□□□□□ -0.18
CPSF1-208ENST00000532560 ATP6AP2A0A1C7CYW4 349 aa13.9□□□□□ -0.18
CPSF1-208ENST00000532560 TBX19O60806 448 aa13.9□□□□□ -0.18
CPSF1-208ENST00000532560 PEX11AO75192 247 aa13.9□□□□□ -0.18
CPSF1-208ENST00000532560 ATP6AP2O75787 350 aa13.9□□□□□ -0.18
CPSF1-208ENST00000532560 SLITRK5O94991 958 aa13.9□□□□□ -0.18
CPSF1-208ENST00000532560 CBX6O95503 412 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms