RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 VTI1BQ9UEU0 232 aa9.43□□□□□ -0.9
VPS28-204ENST00000526054 DLGAP4Q9Y2H0 992 aa9.43□□□□□ -0.9
VPS28-204ENST00000526054 CLDN16Q9Y5I7 305 aa9.43□□□□□ -0.9
VPS28-204ENST00000526054 CLCA3PQ9Y6N3 262 aa9.43□□□□□ -0.9
VPS28-204ENST00000526054 TRPC5OSA6NMA1 111 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 C17orf105B2RV13 164 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 POLR3GO15318 223 aaPredicted RBP9.42□□□□□ -0.9
VPS28-204ENST00000526054 OR10H2O60403 315 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 SNRPB2P08579 225 aaKnown RBP9.42□□□□□ -0.9
VPS28-204ENST00000526054 ESRRAP11474 423 aaPredicted RBP9.42□□□□□ -0.9
VPS28-204ENST00000526054 COX6B1P14854 86 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 HTR1EP28566 365 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 ASMTP46597 345 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 HK2P52789 917 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 ALDH6A1Q02252 535 aaKnown RBP9.42□□□□□ -0.9
VPS28-204ENST00000526054 OC90Q02509 493 aaPredicted RBP9.42□□□□□ -0.9
VPS28-204ENST00000526054 MAD2L1Q13257 205 aaPredicted RBP9.42□□□□□ -0.9
VPS28-204ENST00000526054 KIAA0040Q15053 153 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 OR1C1Q15619 314 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 H3F3CQ6NXT2 135 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 SLC48A1Q6P1K1 146 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 OR4N5Q8IXE1 308 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 SAMD14Q8IZD0 417 aaPredicted RBP9.42□□□□□ -0.9
VPS28-204ENST00000526054 ST13P4Q8IZP2 240 aaPredicted RBP9.42□□□□□ -0.9
VPS28-204ENST00000526054 FNDC5Q8NAU1 212 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 TMEM178AQ8NBL3 297 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 FAM98AQ8NCA5 519 aaKnown RBP9.42□□□□□ -0.9
VPS28-204ENST00000526054 B3GNT7Q8NFL0 401 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 VMP1Q96GC9 406 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 RBM18Q96H35 190 aaKnown RBP9.42□□□□□ -0.9
VPS28-204ENST00000526054 ART5Q96L15 291 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 FCRL1Q96LA6 429 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 GPR137Q96N19 417 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 SIGLEC12Q96PQ1 595 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 HES7Q9BYE0 225 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 TSPAN10Q9H1Z9 355 aaPredicted RBP9.42□□□□□ -0.9
VPS28-204ENST00000526054 MMP25Q9NPA2 562 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 MIEF1Q9NQG6 463 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 PNPOQ9NVS9 261 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 EHD3Q9NZN3 535 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 MARCOQ9UEW3 520 aaPredicted RBP9.42□□□□□ -0.9
VPS28-204ENST00000526054 TINAGQ9UJW2 476 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 UTS2RQ9UKP6 389 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 PCDHGB6Q9Y5F9 930 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 ZNF780BQ9Y6R6 833 aa9.42□□□□□ -0.9
VPS28-204ENST00000526054 NCOA6Q14686 2063 aaPredicted RBP9.42□□□□□ -0.9
VPS28-204ENST00000526054 APCP25054 2843 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 CSMD2Q7Z408 3487 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 MYOCOSA0A1B0GUC4 107 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 ATP6AP2A0A1C7CYW4 349 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 GABRR3A8MPY1 467 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 PGRMC2O15173 223 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 HDAC3O15379 428 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 PEX11AO75192 247 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 ERAL1O75616 437 aaKnown RBP9.41□□□□□ -0.9
VPS28-204ENST00000526054 ATP6AP2O75787 350 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 JUNP05412 331 aaKnown RBP9.41□□□□□ -0.9
VPS28-204ENST00000526054 SLC35E2P0CK97 266 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 CPMP14384 443 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 CD46P15529 392 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 DDX5P17844 614 aaKnown RBP9.41□□□□□ -0.9
VPS28-204ENST00000526054 CSNK2A2P19784 350 aaPredicted RBP9.41□□□□□ -0.9
VPS28-204ENST00000526054 DDCP20711 480 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 GALNSP34059 522 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 CD96P40200 585 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 ST13P50502 369 aaKnown RBP9.41□□□□□ -0.9
VPS28-204ENST00000526054 CLCN2P51788 898 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 XKP51811 444 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 SMSP52788 366 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 C2orf80Q0P641 193 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 C3AR1Q16581 482 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 ZNF630Q2M218 657 aaPredicted RBP9.41□□□□□ -0.9
VPS28-204ENST00000526054 SMU1Q2TAY7 513 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 RFTN2Q52LD8 501 aaPredicted RBP9.41□□□□□ -0.9
VPS28-204ENST00000526054 C6orf136Q5SQH8 315 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 SPINK14Q6IE38 97 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 XKRXQ6PP77 449 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 LRRC34Q8IZ02 419 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 LGI4Q8N135 537 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 HORMAD2Q8N7B1 307 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 MORN4Q8NDC4 146 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 NFAM1Q8NET5 270 aaPredicted RBP9.41□□□□□ -0.9
VPS28-204ENST00000526054 PIWIL2Q8TC59 973 aaKnown RBP9.41□□□□□ -0.9
VPS28-204ENST00000526054 THAP3Q8WTV1 239 aaPredicted RBP9.41□□□□□ -0.9
VPS28-204ENST00000526054 CKAP2Q8WWK9 683 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 SCMH1Q96GD3 660 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 PPP1R36Q96LQ0 422 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 C3orf30Q96M34 536 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 MAGEB18Q96M61 343 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 C7orf26Q96N11 449 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 FRMD6Q96NE9 622 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 NPAS2Q99743 824 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 C1orf50Q9BV19 199 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 NUF2Q9BZD4 464 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.41□□□□□ -0.9
VPS28-204ENST00000526054 HEY2Q9UBP5 337 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 COPS7AQ9UBW8 275 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 GIMAP2Q9UG22 337 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 CES1P1Q9UKY3 287 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 PPIEQ9UNP9 301 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms