RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 CYB561P49447 251 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 TNFSF10P50591 281 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 HLCSP50747 726 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 SSR4P51571 173 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 NCBP2P52298 156 aaKnown RBP eCLIP13.24□□□□□ -0.29
NUP54-216ENST00000514901 TUBA3CQ13748 450 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 ZNF169Q14929 603 aaPredicted RBP13.24□□□□□ -0.29
NUP54-216ENST00000514901 PLEKHN1Q494U1 663 aaPredicted RBP13.24□□□□□ -0.29
NUP54-216ENST00000514901 NADK2Q4G0N4 442 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 ZNF628Q5EBL2 1059 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 CPTPQ5TA50 214 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 HLA-DQA1Q5Y7H0 255 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 SLC6A19Q695T7 634 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 FAM180BQ6P0A1 224 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 TUBA3EQ6PEY2 450 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 TMEM156Q8N614 296 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 SLC15A4Q8N697 577 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 ADCY4Q8NFM4 1077 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 CEP70Q8NHQ1 597 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 CLHC1Q8NHS4 586 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 ZFP28Q8NHY6 868 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 THAP3Q8WTV1 239 aaPredicted RBP13.24□□□□□ -0.29
NUP54-216ENST00000514901 TP53INP1Q96A56 240 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 ZBED6CLQ96FA7 236 aaPredicted RBP13.24□□□□□ -0.29
NUP54-216ENST00000514901 MAELQ96JY0 434 aaKnown RBP13.24□□□□□ -0.29
NUP54-216ENST00000514901 MFRPQ9BY79 579 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 TRIM45Q9H8W5 580 aaPredicted RBP13.24□□□□□ -0.29
NUP54-216ENST00000514901 SLCO1B3Q9NPD5 702 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 SLAMF7Q9NQ25 335 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 ACSS1Q9NUB1 689 aaPredicted RBP13.24□□□□□ -0.29
NUP54-216ENST00000514901 PRODH2Q9UF12 536 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 USH1CQ9Y6N9 552 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 CPAMD8Q8IZJ3 1885 aa13.24□□□□□ -0.29
NUP54-216ENST00000514901 A0A087WV62 115 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 PLOD2O00469 737 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 ZNF195O14628 629 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 PRKNO60260 465 aaPredicted RBP13.23□□□□□ -0.29
NUP54-216ENST00000514901 MAN1A2O60476 641 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 PLOD3O60568 738 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 PRAMEF2O60811 474 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 EPHA3P29320 983 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 CD96P40200 585 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 CD97P48960 835 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 DCAF7P61962 342 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 DUSP2Q05923 314 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 PTGR1Q14914 329 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 PIGGQ5H8A4 983 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 RPUSD3Q6P087 351 aaKnown RBP13.23□□□□□ -0.29
NUP54-216ENST00000514901 FAM111BQ6SJ93 734 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 EPGNQ6UW88 154 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 C9orf40Q8IXQ3 194 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 ZNF615Q8N8J6 731 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 CATSPER1Q8NEC5 780 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 C17orf47Q8NEP4 570 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 OR9A2Q8NGT5 310 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 DOK4Q8TEW6 326 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 ASB15Q8WXK1 588 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 COQ8BQ96D53 544 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 AMDHD1Q96NU7 426 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 WWTR1Q9GZV5 400 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 GLIPR2Q9H4G4 154 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 WDR55Q9H6Y2 383 aaPredicted RBP13.23□□□□□ -0.29
NUP54-216ENST00000514901 BCAP29Q9UHQ4 241 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 PCDHGB6Q9Y5F9 930 aa13.23□□□□□ -0.29
NUP54-216ENST00000514901 C2orf92A0A1B0GVN3 265 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 WWP2O00308 870 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 OR2J2O76002 312 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 CLPSP04118 112 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 CD46P15529 392 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 FRKP42685 505 aaPredicted RBP13.22□□□□□ -0.29
NUP54-216ENST00000514901 DIO3P55073 304 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 MANFP55145 182 aaKnown RBP13.22□□□□□ -0.29
NUP54-216ENST00000514901 OC90Q02509 493 aaPredicted RBP13.22□□□□□ -0.29
NUP54-216ENST00000514901 MLC1Q15049 377 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 EBPQ15125 230 aaKnown RBP13.22□□□□□ -0.29
NUP54-216ENST00000514901 OR1C1Q15619 314 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 PRSS53Q2L4Q9 553 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 TRMT12Q53H54 448 aaKnown RBP13.22□□□□□ -0.29
NUP54-216ENST00000514901 NXNQ6DKJ4 435 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 OPN5Q6U736 354 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 ACAD11Q709F0 780 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 CAMKMTQ7Z624 323 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 RIMKLAQ8IXN7 391 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 DND1Q8IYX4 353 aaKnown RBP13.22□□□□□ -0.29
NUP54-216ENST00000514901 TAGAPQ8N103 731 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 SLC22A8Q8TCC7 542 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 KAT2AQ92830 837 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 RASL10BQ96S79 203 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 DPY30Q9C005 99 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 LRFN1Q9P244 771 aa13.22□□□□□ -0.29
NUP54-216ENST00000514901 NBASA2RRP1 2371 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 NUP214P35658 2090 aaPredicted RBP13.21□□□□□ -0.29
NUP54-216ENST00000514901 GOLGA8QA0A0J9YX86 632 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 GOLGA8OA6NCC3 632 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 A8MVJ9 347 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 CAPN14A8MX76 684 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 TCP11X1B4DZS4 312 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 GOLGA8NF8WBI6 632 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 DIAPH2O60879 1101 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 COQ9O75208 318 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms