RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PLA2G10O15496 165 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 ERAL1O75616 437 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 CXCL14O95715 111 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 TP53P04637 393 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 ITGB7P26010 798 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 DDOSTP39656 456 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 CCDC85BQ15834 202 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 TMEM201Q5SNT2 666 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 KHDRBS2Q5VWX1 349 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 C17orf64Q86WR6 236 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 DTX3Q8N9I9 347 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 ENKURQ8TC29 256 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 WDR34Q96EX3 536 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 ZNF582Q96NG8 517 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 HDHD5Q9BXW7 423 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 OR51I1Q9H343 314 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 SIRT3Q9NTG7 399 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 TDP1Q9NUW8 608 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 ARRDC5A6NEK1 342 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 OR6C70A6NIJ9 312 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 SOD1P00441 154 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 UBE3AQ05086 875 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 MESP2Q0VG99 397 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 INSL4Q14641 139 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 GLYR1Q49A26 553 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 CACUL1Q86Y37 369 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 OTULINQ96BN8 352 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 KCTD7Q96MP8 289 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 FRMD6Q96NE9 622 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 KATNB1Q9BVA0 655 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 TBC1D17Q9HA65 648 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 NPAP1Q9NZP6 1156 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 IL20RAQ9UHF4 553 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 NUMA1Q14980 2115 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 A0A0B4J293 547 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 CASKO14936 926 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 NCR1O76036 304 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 SOX18P35713 384 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 SLC9A3P48764 834 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 RAB25P57735 213 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 DDI2Q5TDH0 399 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 TFGQ92734 400 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 UBE2E3Q969T4 207 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 RAD51AP1Q96B01 352 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 RNF31Q96EP0 1072 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 DTD2Q96FN9 168 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 FBXW2Q9UKT8 454 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 ICKQ9UPZ9 632 aa8.75□□□□□ -1.01
LIMCH1-215ENST00000512632 IQCMA0A1B0GVH7 501 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 LILRB5O75023 590 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 PDE9AO76083 593 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 RAB36O95755 333 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 CCNYL3P0C7X3 344 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 P2RY14Q15391 338 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 ZNF750Q32MQ0 723 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 PLET1Q6UQ28 207 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 B3GLCTQ6Y288 498 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 NOXA1Q86UR1 476 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 FAM129CQ86XR2 697 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 FAM26EQ8N5C1 309 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 ZNF717Q9BY31 904 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 ANKRA2Q9H9E1 313 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 A4GALTQ9NPC4 353 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 TM7SF3Q9NS93 570 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 HELZP42694 1942 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 POLR1CO15160 346 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 OR1F1O43749 312 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 IL1AP01583 271 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 CXCL10P02778 98 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 ENDOUP21128 410 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 BSGP35613 385 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 LASP1Q14847 261 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 GPR19Q15760 415 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 OCLNQ16625 522 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 GPAT3Q53EU6 434 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 XKRXQ6PP77 449 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 CCDC149Q6ZUS6 474 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 TBC1D19Q8N5T2 526 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 NLGN4YQ8NFZ3 816 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 KLK6Q92876 244 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 WDFY2Q96P53 400 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 RNF121Q9H920 327 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 RPRD1BQ9NQG5 326 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 CNIH4Q9P003 139 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 SLC23A2Q9UGH3 650 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 CPNE3O75131 537 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 PSKH1P11801 424 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 WNT4P56705 351 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 FABP5Q01469 135 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 ALDH6A1Q02252 535 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 QPRTQ15274 297 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 SYCE2Q6PIF2 218 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 IKBIPQ70UQ0 350 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 SLC30A8Q8IWU4 369 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 VWA5B2Q8N398 1253 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 ING5Q8WYH8 240 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 RNFT2Q96EX2 444 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 DEFB118Q96PH6 123 aa8.74□□□□□ -1.01
LIMCH1-215ENST00000512632 DCLRE1CQ96SD1 692 aaKnown RBP8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms