RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 ELAVL1Q15717 326 aaKnown RBP18.09■□□□□ 0.49
USP39-218ENST00000493829 RABL3Q5HYI8 236 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 TRIML2Q8N7C3 387 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 ZNF321PQ8N8H1 164 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 GOT1L1Q8NHS2 421 aaPredicted RBP18.09■□□□□ 0.49
USP39-218ENST00000493829 FBXO30Q8TB52 745 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 SLC7A6OSQ96CW6 309 aaPredicted RBP18.09■□□□□ 0.49
USP39-218ENST00000493829 OTUB1Q96FW1 271 aaPredicted RBP18.09■□□□□ 0.49
USP39-218ENST00000493829 OR8D2Q9GZM6 311 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 C19orf25Q9UFG5 118 aaPredicted RBP18.09■□□□□ 0.49
USP39-218ENST00000493829 HS3ST3B1Q9Y662 390 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 TRBV5-3A0A0A0MS03 114 aa18.08■□□□□ 0.48
USP39-218ENST00000493829 CD63P08962 238 aa18.08■□□□□ 0.48
USP39-218ENST00000493829 UQCRC2P22695 453 aa18.08■□□□□ 0.48
USP39-218ENST00000493829 CPOXP36551 454 aa18.08■□□□□ 0.48
USP39-218ENST00000493829 CCT3P49368 545 aaKnown RBP18.08■□□□□ 0.48
USP39-218ENST00000493829 PSME3P61289 254 aa18.08■□□□□ 0.48
USP39-218ENST00000493829 TMEM205Q6UW68 189 aa18.08■□□□□ 0.48
USP39-218ENST00000493829 CPEB2Q7Z5Q1 589 aaKnown RBP18.08■□□□□ 0.48
USP39-218ENST00000493829 DEFB107AQ8IZN7 70 aa18.08■□□□□ 0.48
USP39-218ENST00000493829 ZNF675Q8TD23 568 aa18.08■□□□□ 0.48
USP39-218ENST00000493829 GPR87Q9BY21 358 aa18.08■□□□□ 0.48
USP39-218ENST00000493829 IKZF5Q9H5V7 419 aa18.08■□□□□ 0.48
USP39-218ENST00000493829 BCAP29Q9UHQ4 241 aa18.08■□□□□ 0.48
USP39-218ENST00000493829 PACSIN3Q9UKS6 424 aa18.08■□□□□ 0.48
USP39-218ENST00000493829 UPK1AO00322 258 aa18.07■□□□□ 0.48
USP39-218ENST00000493829 HOXD11P31277 338 aaPredicted RBP18.07■□□□□ 0.48
USP39-218ENST00000493829 SLC7A2P52569 658 aa18.07■□□□□ 0.48
USP39-218ENST00000493829 PAPD4Q6PIY7 484 aaKnown RBP18.07■□□□□ 0.48
USP39-218ENST00000493829 C16orf89Q6UX73 402 aa18.07■□□□□ 0.48
USP39-218ENST00000493829 WDR53Q7Z5U6 358 aaPredicted RBP18.07■□□□□ 0.48
USP39-218ENST00000493829 KIF2BQ8N4N8 673 aa18.07■□□□□ 0.48
USP39-218ENST00000493829 OR52R1Q8NGF1 315 aa18.07■□□□□ 0.48
USP39-218ENST00000493829 PSMA8Q8TAA3 256 aa18.07■□□□□ 0.48
USP39-218ENST00000493829 SLC2A12Q8TD20 617 aa18.07■□□□□ 0.48
USP39-218ENST00000493829 ANKRD27Q96NW4 1050 aa18.07■□□□□ 0.48
USP39-218ENST00000493829 CPPED1Q9BRF8 314 aaPredicted RBP18.07■□□□□ 0.48
USP39-218ENST00000493829 YIPF4Q9BSR8 244 aa18.07■□□□□ 0.48
USP39-218ENST00000493829 C3orf14Q9HBI5 128 aa18.07■□□□□ 0.48
USP39-218ENST00000493829 TAS2R1Q9NYW7 299 aa18.07■□□□□ 0.48
USP39-218ENST00000493829 KCND3Q9UK17 655 aa18.07■□□□□ 0.48
USP39-218ENST00000493829 AHCTF1Q8WYP5 2266 aa18.07■□□□□ 0.48
USP39-218ENST00000493829 GYG2O15488 501 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 EMC8O43402 210 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 DYRK3O43781 588 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 ADRB1P08588 477 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 MMP11P24347 488 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 PRR5P85299 388 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 DUSP8Q13202 625 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 CLN3Q13286 438 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.06■□□□□ 0.48
USP39-218ENST00000493829 FHL5Q5TD97 284 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 NANOGP8Q6NSW7 305 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 HACD2Q6Y1H2 254 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 PPP1R32Q7Z5V6 425 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 NUP43Q8NFH3 380 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 OR14A16Q8NHC5 309 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 DNAJB8Q8NHS0 232 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 ZFP90Q8TF47 636 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 THUMPD3Q9BV44 507 aaKnown RBP18.06■□□□□ 0.48
USP39-218ENST00000493829 NANOGQ9H9S0 305 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 TPT1P8Q9HAU6 139 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 NUP214P35658 2090 aaPredicted RBP18.06■□□□□ 0.48
USP39-218ENST00000493829 SAGE2PA6NJ88 616 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 MASP2O00187 686 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 CLIC1O00299 241 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 SOCS6O14544 535 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 ATP5HO75947 161 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 CBX7O95931 251 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 CYC1P08574 325 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 ZCCHC18P0CG32 403 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 SLC6A2P23975 617 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 MAP4K2Q12851 820 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 BIKQ13323 160 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 RUNDC3AQ59EK9 446 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 C8orf82Q6P1X6 216 aaPredicted RBP18.06■□□□□ 0.48
USP39-218ENST00000493829 TMEM64Q6YI46 380 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 ZNF771Q7L3S4 317 aaPredicted RBP18.06■□□□□ 0.48
USP39-218ENST00000493829 RNF130Q86XS8 419 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 PGAM4Q8N0Y7 254 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 OR2L13Q8N349 312 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 OR56A1Q8NGH5 318 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 SFXN5Q8TD22 340 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 JADE3Q92613 823 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 CTHRC1Q96CG8 243 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 SENP5Q96HI0 755 aaPredicted RBP18.06■□□□□ 0.48
USP39-218ENST00000493829 SLC35G5Q96KT7 338 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 PHF12Q96QT6 1004 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 LPAR4Q99677 370 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 WDR77Q9BQA1 342 aaPredicted RBP18.06■□□□□ 0.48
USP39-218ENST00000493829 GPATCH1Q9BRR8 931 aaKnown RBP18.06■□□□□ 0.48
USP39-218ENST00000493829 PIF1Q9H611 641 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 ADA2Q9NZK5 511 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 PTGFRNQ9P2B2 879 aa18.06■□□□□ 0.48
USP39-218ENST00000493829 FREM2Q5SZK8 3169 aa18.05■□□□□ 0.48
USP39-218ENST00000493829 PCSK5Q92824 1860 aa18.05■□□□□ 0.48
USP39-218ENST00000493829 PLOD2O00469 737 aa18.05■□□□□ 0.48
USP39-218ENST00000493829 TLX3O43711 291 aaPredicted RBP18.05■□□□□ 0.48
USP39-218ENST00000493829 HNRNPCL1O60812 293 aaKnown RBP18.05■□□□□ 0.48
USP39-218ENST00000493829 DDAH2O95865 285 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms