RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 NAV3Q8IVL0 2385 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 DSPP15924 2871 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 PCNX1Q96RV3 2341 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 DNHD1Q96M86 4753 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 RELNP78509 3460 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 CHD7Q9P2D1 2997 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 A0A087X002 238 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 MACROD2A1Z1Q3 448 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ZSCAN5BA6NJL1 495 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 OR6C65A6NJZ3 312 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 GOLGA8KD6RF30 607 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 E9PQ18 207 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 H7C0C1 242 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 TRDMT1O14717 391 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 MCF2LO15068 1137 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ARPC2O15144 300 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 STX6O43752 255 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 GLRA3O75311 464 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 SURF6O75683 361 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 CDK2AP2O75956 126 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 GJB5O95377 273 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 YEATS4O95619 227 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 POP4O95707 220 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 GUCA1CO95843 209 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 FYNP06241 537 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 HEXBP07686 556 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 SNRPAP09012 282 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 SMIM18P0DKX4 95 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 CALM1P0DP23 149 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 CALM2P0DP24 149 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 CALM3P0DP25 149 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 SLC2A2P11168 524 aaPredicted RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 IRF2P14316 349 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 HPGDP15428 266 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 MX1P20591 662 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF10P21506 573 aaPredicted RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 LHCGRP22888 699 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 PTPN3P26045 913 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 HMOX2P30519 316 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 PCGF2P35227 344 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 RBMXP38159 391 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 MMP12P39900 470 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 NKX2-1P43699 371 aaPredicted RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 TSFMP43897 325 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 CAPZA2P47755 286 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ERFP50548 548 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ETV1P50549 477 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 MAPK12P53778 367 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 IST1P53990 364 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 VBP1P61758 197 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 PSMC6P62333 389 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 CSNK2BP67870 215 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 CCZ1BP86790 482 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 CCZ1P86791 482 aaPredicted RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 OTUD4Q01804 1114 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ROR1Q01973 937 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 RELAQ04206 551 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 C2orf54Q08AI8 447 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 AIMP1Q12904 312 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 XRCC4Q13426 336 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 CUL1Q13616 776 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 CASP8Q14790 479 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 SF3A2Q15428 464 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 UGP2Q16851 508 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 TMEM266Q2M3C6 531 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF528Q3MIS6 628 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 KCTD21Q4G0X4 260 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 EPC2Q52LR7 807 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ODF2Q5BJF6 829 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 XKR6Q5GH73 641 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ANKRD20A2Q5SQ80 823 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ANKRD20A1Q5TYW2 823 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ANKRD20A3Q5VUR7 823 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 SHEQ5VZ18 495 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 TTC23LQ6PF05 361 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 PTAR1Q7Z6K3 402 aaPredicted RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ADGRA1Q86SQ6 560 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ADIPOR2Q86V24 386 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 KRTAP7-1Q8IUC3 87 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 LRRC8AQ8IWT6 810 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 TBC1D21Q8IYX1 336 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 LRRC34Q8IZ02 419 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 LGI2Q8N0V4 545 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 CCNYL1Q8N7R7 359 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF540Q8NDQ6 660 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 OR6C4Q8NGE1 309 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 OR8H1Q8NGG4 311 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 OR10G8Q8NGN5 311 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 CFAP61Q8NHU2 1237 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 MAPK15Q8TD08 544 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 AGAP11Q8TF27 550 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 DDI1Q8WTU0 396 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 SMAP2Q8WU79 429 aaPredicted RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 SEPT1Q8WYJ6 367 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 RAPGEF5Q92565 580 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 NCLNQ969V3 563 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 SGK3Q96BR1 496 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 MOB3AQ96BX8 217 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 HDAC11Q96DB2 347 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ARSGQ96EG1 525 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms