RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 OR7G2Q8NG99 324 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 GOT1L1Q8NHS2 421 aaPredicted RBP11.41□□□□□ -0.58
SDC1-206ENST00000482879 PSMA8Q8TAA3 256 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 SLC2A12Q8TD20 617 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 CTHRC1Q96CG8 243 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 RCN3Q96D15 328 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 NSL1Q96IY1 281 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 ART5Q96L15 291 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 IMMP1LQ96LU5 166 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 NPAS2Q99743 824 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 TUBB6Q9BUF5 446 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 CXorf36Q9H7Y0 433 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 ANKRA2Q9H9E1 313 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 C3orf14Q9HBI5 128 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 ZNF160Q9HCG1 818 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 NEUROD4Q9HD90 331 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 SIRT3Q9NTG7 399 aaPredicted RBP11.41□□□□□ -0.58
SDC1-206ENST00000482879 BCAP29Q9UHQ4 241 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 TAGLN3Q9UI15 199 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 FBXL4Q9UKA2 621 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 VPS4AQ9UN37 437 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 ERVK-19Q9WJR5 959 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 MAN2B2Q9Y2E5 1009 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 RAXQ9Y2V3 346 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 CHD8Q9HCK8 2581 aa11.41□□□□□ -0.58
SDC1-206ENST00000482879 PCSK5Q92824 1860 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 A0A087WV62 115 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 A0A096LPI6 279 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 MRASO14807 208 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 AIM2O14862 343 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 EMC8O43402 210 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 PLOD3O60568 738 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 KCNH1O95259 989 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 HPP00738 406 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 S1PR1P21453 382 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 UQCRC2P22695 453 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 SSTR4P31391 388 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 CCT3P49368 545 aaKnown RBP11.4□□□□□ -0.58
SDC1-206ENST00000482879 PRKAG1P54619 331 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 SLC26A5P58743 744 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 FUT7Q11130 342 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 NFYCQ13952 458 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 EXOSC7Q15024 291 aaKnown RBP11.4□□□□□ -0.58
SDC1-206ENST00000482879 EXT1Q16394 746 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 BTBD16Q32M84 506 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 COQ5Q5HYK3 327 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 FHL5Q5TD97 284 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 BROXQ5VW32 411 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 DNAJC14Q6Y2X3 702 aaPredicted RBP11.4□□□□□ -0.58
SDC1-206ENST00000482879 SZRD1Q7Z422 152 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 CLEC4FQ8N1N0 589 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 DPP10Q8N608 796 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 TRIML2Q8N7C3 387 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 AMER2Q8N7J2 671 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 ZNF321PQ8N8H1 164 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 PCYOX1LQ8NBM8 494 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 B3GNT7Q8NFL0 401 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 OR7G1Q8NGA0 311 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 ZNF721Q8TF20 911 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 THAP4Q8WY91 577 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 NCLNQ969V3 563 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 FBXL20Q96IG2 436 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 NUDT9Q9BW91 350 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 TRIM4Q9C037 500 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 PAIP1Q9H074 479 aaKnown RBP11.4□□□□□ -0.58
SDC1-206ENST00000482879 EFCAB1Q9HAE3 211 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 IL1RL2Q9HB29 575 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 DDX18Q9NVP1 670 aaKnown RBP11.4□□□□□ -0.58
SDC1-206ENST00000482879 SLAMF8Q9P0V8 285 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 PTGFRNQ9P2B2 879 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 MAP10Q9P2G4 905 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 COPS7AQ9UBW8 275 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 ZNF639Q9UID6 485 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 C19orf53Q9UNZ5 99 aaPredicted RBP11.4□□□□□ -0.58
SDC1-206ENST00000482879 SSUH2Q9Y2M2 353 aa11.4□□□□□ -0.58
SDC1-206ENST00000482879 CNTRLQ7Z7A1 2325 aa11.4□□□□□ -0.59
SDC1-206ENST00000482879 TPRP12270 2363 aaKnown RBP11.39□□□□□ -0.59
SDC1-206ENST00000482879 MASP2O00187 686 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 UPK1AO00322 258 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 ERN1O75460 977 aaKnown RBP11.39□□□□□ -0.59
SDC1-206ENST00000482879 BCAS2O75934 225 aaPredicted RBP11.39□□□□□ -0.59
SDC1-206ENST00000482879 UBOX5O94941 541 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 CBX6O95503 412 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 CBX7O95931 251 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 IGKV3-11P04433 115 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 IFI6P09912 130 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 ZCCHC18P0CG32 403 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 ESRRAP11474 423 aaPredicted RBP11.39□□□□□ -0.59
SDC1-206ENST00000482879 ICAM2P13598 275 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 CPA2P48052 419 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 GPR143P51810 404 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 PRR5P85299 388 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 GABPB1Q06547 395 aaPredicted RBP11.39□□□□□ -0.59
SDC1-206ENST00000482879 CDC20Q12834 499 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 ART3Q13508 389 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 GTDC1Q4AE62 458 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 CRTC2Q53ET0 693 aaPredicted RBP11.39□□□□□ -0.59
SDC1-206ENST00000482879 LRIF1Q5T3J3 769 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 PLAG1Q6DJT9 500 aa11.39□□□□□ -0.59
SDC1-206ENST00000482879 DLEU7Q6UYE1 221 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms