RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	IGLV3-21	P80748	117 aa	Predicted RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	DCD	P81605	110 aa	Known RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	VEZF1	Q14119	521 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	ISX	Q2M1V0	245 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	NKAIN1	Q4KMZ8	207 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	CDCP2	Q5VXM1	449 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	DHRS13	Q6UX07	377 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	RNF111	Q6ZNA4	994 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	MED25	Q71SY5	747 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	GALNT10	Q86SR1	603 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	ST13P4	Q8IZP2	240 aa	Predicted RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	C11orf65	Q8NCR3	313 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	DEFB124	Q8NES8	71 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	NFKBID	Q8NI38	313 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	FAM110B	Q8TC76	370 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	XAGE5	Q8WWM1	108 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	PMEPA1	Q969W9	287 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	GIMAP5	Q96F15	307 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	DGAT2	Q96PD7	388 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	TMEM38A	Q9H6F2	299 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	MKKS	Q9NPJ1	570 aa	Predicted RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	SLC39A1	Q9NY26	324 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	AKAP7	Q9P0M2	348 aa	Predicted RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	NTM	Q9P121	344 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	PTGFRN	Q9P2B2	879 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	STX18	Q9P2W9	335 aa	Known RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	AURKC	Q9UQB9	309 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	AP4S1	Q9Y587	144 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656		V9GYQ6	96 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	COL27A1	Q8IZC6	1860 aa	Predicted RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	DHRS12	A0PJE2	317 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	GCM2	O75603	506 aa	Predicted RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	MT-CO3	P00414	261 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	SERPINA1	P01009	418 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	IFNA16	P05015	189 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	IL10	P22301	178 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	AQP1	P29972	269 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	SLC7A1	P30825	629 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	KDELR2	P33947	212 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	EFNA3	P52797	238 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	FOXL2	P58012	376 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	CDK6	Q00534	326 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	EEF1A2	Q05639	463 aa	Known RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	RBBP4	Q09028	425 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	MAP4K2	Q12851	820 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	SCARB2	Q14108	478 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	FHL5	Q5TD97	284 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	ZNF385C	Q66K41	422 aa	Predicted RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	LCN10	Q6JVE6	187 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	ZFP1	Q6P2D0	407 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	SHISA6	Q6ZSJ9	500 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	WDR53	Q7Z5U6	358 aa	Predicted RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	SLCO6A1	Q86UG4	719 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	SLC44A2	Q8IWA5	706 aa	Predicted RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	OR2L13	Q8N349	312 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	FBXO30	Q8TB52	745 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	ZNF675	Q8TD23	568 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	RIT1	Q92963	219 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	CTHRC1	Q96CG8	243 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	DUS3L	Q96G46	650 aa	Known RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	PHOX2B	Q99453	314 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	SEPHS2	Q99611	448 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	ASPSCR1	Q9BZE9	553 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	CXorf21	Q9HAI6	301 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	DCAF13	Q9NV06	445 aa	Known RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	CTSF	Q9UBX1	484 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	C19orf53	Q9UNZ5	99 aa	Predicted RBP	10.49	□□□□□ -0.73
APTX-223	ENST00000479656	LOXL2	Q9Y4K0	774 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	PCDHGA1	Q9Y5H4	931 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	KCNE3	Q9Y6H6	103 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656	WDR87	Q6ZQQ6	2873 aa		10.49	□□□□□ -0.73
APTX-223	ENST00000479656		A0A087WV62	115 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	PRAMEF27	A3QJZ7	478 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	MEN1	O00255	615 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	FOXD2	O60548	495 aa	Predicted RBP	10.48	□□□□□ -0.73
APTX-223	ENST00000479656	PLOD3	O60568	738 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	CS	O75390	466 aa	Known RBP	10.48	□□□□□ -0.73
APTX-223	ENST00000479656	TFPT	P0C1Z6	253 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	ARAF	P10398	606 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	TNNI3	P19429	210 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	PCGF2	P35227	344 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	RORA	P35398	523 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	ETV5	P41161	510 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	STT3A	P46977	705 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	MAPK10	P53779	464 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	SESN3	P58005	492 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	RHAG	Q02094	409 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	SLC34A1	Q06495	639 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	SERTAD2	Q14140	314 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	MAP7	Q14244	749 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	EXOSC7	Q15024	291 aa	Known RBP	10.48	□□□□□ -0.73
APTX-223	ENST00000479656	LRRC23	Q53EV4	343 aa	Predicted RBP	10.48	□□□□□ -0.73
APTX-223	ENST00000479656	ENPP6	Q6UWR7	440 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	QSOX2	Q6ZRP7	698 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	RAB11FIP2	Q7L804	512 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	TMEM151B	Q8IW70	566 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	GALNT12	Q8IXK2	581 aa		10.48	□□□□□ -0.73
APTX-223	ENST00000479656	ADGRG5	Q8IZF4	528 aa		10.48	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms