RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 NDE1Q9NXR1 346 aa6.26□□□□□ -1.41
USP48-208ENST00000479177 TAS2R7Q9NYW3 318 aa6.26□□□□□ -1.41
USP48-208ENST00000479177 TAS2R1Q9NYW7 299 aa6.26□□□□□ -1.41
USP48-208ENST00000479177 PRR13Q9NZ81 148 aa6.26□□□□□ -1.41
USP48-208ENST00000479177 BTNL2Q9UIR0 455 aa6.26□□□□□ -1.41
USP48-208ENST00000479177 FBXW2Q9UKT8 454 aa6.26□□□□□ -1.41
USP48-208ENST00000479177 DAPP1Q9UN19 280 aa6.26□□□□□ -1.41
USP48-208ENST00000479177 SRPK3Q9UPE1 567 aa6.26□□□□□ -1.41
USP48-208ENST00000479177 GPR55Q9Y2T6 319 aaPredicted RBP6.26□□□□□ -1.41
USP48-208ENST00000479177 PCDHGA1Q9Y5H4 931 aa6.26□□□□□ -1.41
USP48-208ENST00000479177 SCN2AQ99250 2005 aa6.26□□□□□ -1.41
USP48-208ENST00000479177 A0A096LPI6 279 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 A0A1B0GX78 115 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 C1orf226A1L170 272 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 EFCAB7A8K855 629 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 ANKRD65E5RJM6 399 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 RNASET2O00584 256 aaKnown RBP6.25□□□□□ -1.41
USP48-208ENST00000479177 CYR61O00622 381 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 DSCR3O14972 297 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 GYG2O15488 501 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 PDPK1O15530 556 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 PROM1O43490 865 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 CHST10O43529 356 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 GSNP06396 782 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 KRT16P08779 473 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 RNH1P13489 461 aaKnown RBP6.25□□□□□ -1.41
USP48-208ENST00000479177 IFNGR1P15260 489 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 DDX5P17844 614 aaKnown RBP6.25□□□□□ -1.41
USP48-208ENST00000479177 EFNA1P20827 205 aaPredicted RBP6.25□□□□□ -1.41
USP48-208ENST00000479177 CPN2P22792 545 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 CSTF2P33240 577 aaKnown RBP eCLIP6.25□□□□□ -1.41
USP48-208ENST00000479177 FRKP42685 505 aaPredicted RBP6.25□□□□□ -1.41
USP48-208ENST00000479177 CDKN2CP42773 168 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 AVPR1BP47901 424 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 KCNJ2P63252 427 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 NHLH1Q02575 133 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 ACTN3Q08043 901 aaPredicted RBP6.25□□□□□ -1.41
USP48-208ENST00000479177 ART3Q13508 389 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 NFYCQ13952 458 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 CAPRIN1Q14444 709 aaKnown RBP6.25□□□□□ -1.41
USP48-208ENST00000479177 MAPKAPK3Q16644 382 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 FAM214AQ32MH5 1076 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 GTDC1Q4AE62 458 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 CCDC157Q569K6 752 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 LRIF1Q5T3J3 769 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 ANXA8L1Q5VT79 327 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 PRAMEF17Q5VTA0 474 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 OR52E8Q6IFG1 317 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 SLC48A1Q6P1K1 146 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 C16orf89Q6UX73 402 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 DLEU7Q6UYE1 221 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 ANKRD46Q86W74 232 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 MSRB3Q8IXL7 192 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 KIAA2013Q8IYS2 634 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 DEFB107AQ8IZN7 70 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 CLECL1Q8IZS7 167 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 PGAM4Q8N0Y7 254 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 METTL27Q8N6F8 245 aaPredicted RBP6.25□□□□□ -1.41
USP48-208ENST00000479177 PCYOX1LQ8NBM8 494 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 DEFB124Q8NES8 71 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 ADAMTS18Q8TE60 1221 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 UCN3Q969E3 161 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 CIDECQ96AQ7 238 aaPredicted RBP6.25□□□□□ -1.41
USP48-208ENST00000479177 EXOSC8Q96B26 276 aaKnown RBP6.25□□□□□ -1.41
USP48-208ENST00000479177 MIEF2Q96C03 454 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 KLHL29Q96CT2 875 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 MVB12AQ96EY5 273 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 ITCHQ96J02 903 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 OR6C1Q96RD1 312 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 GPATCH1Q9BRR8 931 aaKnown RBP6.25□□□□□ -1.41
USP48-208ENST00000479177 SLC39A3Q9BRY0 314 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 INPP5KQ9BT40 448 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 CADM1Q9BY67 442 aaKnown RBP6.25□□□□□ -1.41
USP48-208ENST00000479177 TRIM4Q9C037 500 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 PAIP1Q9H074 479 aaKnown RBP6.25□□□□□ -1.41
USP48-208ENST00000479177 RMND5AQ9H871 391 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 WDR41Q9HAD4 459 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 CLK4Q9HAZ1 481 aaKnown RBP6.25□□□□□ -1.41
USP48-208ENST00000479177 IL1RL2Q9HB29 575 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 SLAMF7Q9NQ25 335 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 GID8Q9NWU2 228 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 OCIAD1Q9NX40 245 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 MS4A12Q9NXJ0 267 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 SH3BP4Q9P0V3 963 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 HCN3Q9P1Z3 774 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 C5AR2Q9P296 337 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 GPR160Q9UJ42 338 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 SERTAD3Q9UJW9 196 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 CES1P1Q9UKY3 287 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 RARRES3Q9UL19 164 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 TMEM184BQ9Y519 407 aaPredicted RBP6.25□□□□□ -1.41
USP48-208ENST00000479177 PCDHGA7Q9Y5G6 932 aa6.25□□□□□ -1.41
USP48-208ENST00000479177 SPEGQ15772 3267 aa6.24□□□□□ -1.41
USP48-208ENST00000479177 C15orf38-AP3S2A0A0A6YYH1 394 aa6.24□□□□□ -1.41
USP48-208ENST00000479177 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.24□□□□□ -1.41
USP48-208ENST00000479177 PRSS51A0A1B0GVH4 220 aa6.24□□□□□ -1.41
USP48-208ENST00000479177 CFAP73A6NFT4 308 aa6.24□□□□□ -1.41
USP48-208ENST00000479177 GLOD5A6NK44 160 aa6.24□□□□□ -1.41
USP48-208ENST00000479177 WASHC1A8K0Z3 465 aa6.24□□□□□ -1.41
USP48-208ENST00000479177 B4E171 279 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms