RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SDR42E1Q8WUS8 393 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 CAVIN3Q969G5 261 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 TMBIM1Q969X1 311 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 KLHL29Q96CT2 875 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 RRNAD1Q96FB5 475 aaKnown RBP4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 EEF2KMTQ96G04 330 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF597Q96LX8 424 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 PRRC1Q96M27 445 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 NACC1Q96RE7 527 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF184Q99676 751 aaPredicted RBP4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 REEP2Q9BRK0 252 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 NAT9Q9BTE0 207 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 GTPBP2Q9BX10 602 aaKnown RBP4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 C11orf54Q9H0W9 315 aaPredicted RBP4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 SLCO5A1Q9H2Y9 848 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 TTYH1Q9H313 450 aaPredicted RBP4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 ACTL8Q9H568 366 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 UGT1A7Q9HAW7 530 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 UGT1A10Q9HAW8 530 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 UGT1A8Q9HAW9 530 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 HCFC1R1Q9NWW0 138 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 ZDHHC7Q9NXF8 308 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 GPR160Q9UJ42 338 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF225Q9UK10 706 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 NUDT5Q9UKK9 219 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 TBX20Q9UMR3 447 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 MOKQ9UQ07 419 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 PADI2Q9Y2J8 665 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 ZDHHC9Q9Y397 364 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 TNFRSF18Q9Y5U5 241 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 PTGDR2Q9Y5Y4 395 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 TRAV25A0A0B4J276 109 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 A0A1W2PPV4 95 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ARHGAP42A6NI28 874 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF785A8K8V0 405 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 M0QYG6 137 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 CDC7O00311 574 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TGFB1I1O43294 461 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 DYRK3O43781 588 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 LANCL1O43813 399 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 NME2P1O60361 137 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ANGPTL1O95841 491 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 RAF1P04049 648 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 GPIP06744 558 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 CHRNGP07510 517 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ERCC1P07992 297 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TMEM191BP0C7N4 346 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF806P0C7X5 589 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 RAP2AP10114 183 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 CD19P15391 556 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 AGAP20933 346 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TACR2P21452 398 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 GLRA1P23415 457 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 MST1P26927 711 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 PTGER4P35408 488 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 RAP1GAPP47736 663 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 VEGFCP49767 419 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 SERPINH1P50454 418 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 CCR8P51685 355 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 FGF8P55075 233 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 RGS8P57771 180 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 DAOAP59103 153 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 JAG1P78504 1218 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 MYBPC1Q00872 1141 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 CDR2Q01850 454 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TNFRSF9Q07011 255 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TFDP2Q14188 446 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC29A2Q14542 456 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 RTP5Q14D33 572 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ATP6AP1Q15904 470 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC18A3Q16572 532 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 SOWAHAQ2M3V2 549 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 C9orf152Q5JTZ5 239 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 RNF43Q68DV7 783 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 FCRL6Q6DN72 434 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 OGFOD2Q6N063 350 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ACSM5Q6NUN0 579 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 PAQR3Q6TCH7 311 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 MPZL3Q6UWV2 235 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 FAM151BQ6UXP7 276 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 FAM92BQ6ZTR7 304 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 RBM45Q8IUH3 476 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ZDHHC21Q8IVQ6 265 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 GSPT2Q8IYD1 628 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 L3MBTL4Q8NA19 623 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TP53I13Q8NBR0 393 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 RBM15BQ8NDT2 890 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 OR2D3Q8NGH3 330 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 OR6Y1Q8NGX8 325 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 C18orf25Q96B23 403 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TMCO6Q96DC7 493 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 PERPQ96FX8 193 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TEAD3Q99594 435 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 MAP3K3Q99759 626 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 MED18Q9BUE0 208 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 SSBP4Q9BWG4 385 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TRIM31Q9BZY9 425 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TRIM9Q9C026 710 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 CSTL1Q9H114 145 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC25A18Q9H1K4 315 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms