RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 PPCDCQ96CD2 204 aa11.54□□□□□ -0.56
USP40-205ENST00000430158 THOC1Q96FV9 657 aaKnown RBP11.54□□□□□ -0.56
USP40-205ENST00000430158 LMF1Q96S06 567 aa11.54□□□□□ -0.56
USP40-205ENST00000430158 UBL7Q96S82 380 aaPredicted RBP11.54□□□□□ -0.56
USP40-205ENST00000430158 SLC25A23Q9BV35 468 aa11.54□□□□□ -0.56
USP40-205ENST00000430158 OR8D2Q9GZM6 311 aa11.54□□□□□ -0.56
USP40-205ENST00000430158 ZNF385DQ9H6B1 395 aa11.54□□□□□ -0.56
USP40-205ENST00000430158 CLMPQ9H6B4 373 aa11.54□□□□□ -0.56
USP40-205ENST00000430158 TCF7L2Q9NQB0 619 aa11.54□□□□□ -0.56
USP40-205ENST00000430158 MIEF1Q9NQG6 463 aa11.54□□□□□ -0.56
USP40-205ENST00000430158 ACSS1Q9NUB1 689 aaPredicted RBP11.54□□□□□ -0.56
USP40-205ENST00000430158 ERVK-19Q9WJR5 959 aa11.54□□□□□ -0.56
USP40-205ENST00000430158 PCDHGB7Q9Y5F8 929 aa11.54□□□□□ -0.56
USP40-205ENST00000430158 ZNF780BQ9Y6R6 833 aa11.54□□□□□ -0.56
USP40-205ENST00000430158 NINQ8N4C6 2090 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 TRBV11-1A0A0K0K1C0 115 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 MKRN2OSH3BPM6 223 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 PLOD2O00469 737 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 UBDO15205 165 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 PLOD3O60568 738 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 ZNF354AO60765 605 aaPredicted RBP11.53□□□□□ -0.56
USP40-205ENST00000430158 PSMG1O95456 288 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 IFI6P09912 130 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 NT5EP21589 574 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 GPX3P22352 226 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 HPCAL1P37235 193 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 CD97P48960 835 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 CLCN2P51788 898 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 PGDP52209 483 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 AP2B1P63010 937 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 RNF4P78317 190 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 MRPS35P82673 323 aaKnown RBP11.53□□□□□ -0.56
USP40-205ENST00000430158 LY6DQ14210 128 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 MLC1Q15049 377 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 PDCD4Q53EL6 469 aaKnown RBP11.53□□□□□ -0.56
USP40-205ENST00000430158 AGAP7PQ5VUJ5 663 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 FCRLBQ6BAA4 426 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 ISLR2Q6UXK2 745 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 ZNF551Q7Z340 670 aaPredicted RBP11.53□□□□□ -0.56
USP40-205ENST00000430158 R3HCC1LQ7Z5L2 792 aaKnown RBP11.53□□□□□ -0.56
USP40-205ENST00000430158 OR7G2Q8NG99 324 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 OR8J2Q8NGG1 315 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 PSMA8Q8TAA3 256 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 KAT2AQ92830 837 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 ADIPOR1Q96A54 375 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 ERP27Q96DN0 273 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 MARK4Q96L34 752 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 AGAP4Q96P64 663 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 SIKE1Q9BRV8 207 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 ANKRA2Q9H9E1 313 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 NPHS2Q9NP85 383 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 NTMQ9P121 344 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 PTGFRNQ9P2B2 879 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 DCTN4Q9UJW0 460 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 TP53TG5Q9Y2B4 290 aa11.53□□□□□ -0.56
USP40-205ENST00000430158 ZNF462Q96JM2 2506 aa11.52□□□□□ -0.56
USP40-205ENST00000430158 A0A087WV62 115 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 PDPK1O15530 556 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 ZFAND5O76080 213 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 NADKO95544 446 aaPredicted RBP11.52□□□□□ -0.57
USP40-205ENST00000430158 IDO1P14902 403 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 CD1EP15812 388 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 MPIP34949 423 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 RPL3P39023 403 aaKnown RBP11.52□□□□□ -0.57
USP40-205ENST00000430158 EMDP50402 254 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 NCBP2P52298 156 aaKnown RBP eCLIP11.52□□□□□ -0.57
USP40-205ENST00000430158 MFAP5Q13361 173 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 GSTA3Q16772 222 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 SOWAHCQ53LP3 525 aaPredicted RBP11.52□□□□□ -0.57
USP40-205ENST00000430158 ACER2Q5QJU3 275 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 CPTPQ5TA50 214 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 NXNQ6DKJ4 435 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 LYPD8Q6UX82 237 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 HSDL2Q6YN16 418 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 C16orf47Q6ZP98 133 aaPredicted RBP11.52□□□□□ -0.57
USP40-205ENST00000430158 RPS19BP1Q86WX3 136 aaKnown RBP11.52□□□□□ -0.57
USP40-205ENST00000430158 ZNF227Q86WZ6 799 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 FUNDC1Q8IVP5 155 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 FAM9CQ8IZT9 166 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 OR2L13Q8N349 312 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 VWA5B2Q8N398 1253 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 RBMXL3Q8N7X1 1067 aaKnown RBP11.52□□□□□ -0.57
USP40-205ENST00000430158 OR7G1Q8NGA0 311 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 C9orf43Q8TAL5 461 aaPredicted RBP11.52□□□□□ -0.57
USP40-205ENST00000430158 NUBPLQ8TB37 319 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 HOXB13Q92826 284 aaPredicted RBP11.52□□□□□ -0.57
USP40-205ENST00000430158 ELP4Q96EB1 424 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 ART5Q96L15 291 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 BBS4Q96RK4 519 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 CNPPD1Q9BV87 410 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 DEFB126Q9BYW3 111 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 BHLHE41Q9C0J9 482 aaPredicted RBP11.52□□□□□ -0.57
USP40-205ENST00000430158 RNF32Q9H0A6 362 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 OR10A5Q9H207 317 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 TRIM45Q9H8W5 580 aaPredicted RBP11.52□□□□□ -0.57
USP40-205ENST00000430158 SLC52A3Q9NQ40 469 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 SIRT3Q9NTG7 399 aaPredicted RBP11.52□□□□□ -0.57
USP40-205ENST00000430158 GIMAP4Q9NUV9 329 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 ZIM2Q9NZV7 527 aa11.52□□□□□ -0.57
USP40-205ENST00000430158 SH3BP4Q9P0V3 963 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms