RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 RBMS1P29558 406 aaKnown RBP2.37□□□□□ -2.03
VPS13A-208ENST00000423463 PDHA2P29803 388 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 ATP5DP30049 168 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 FMO4P31512 558 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 CCR7P32248 378 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 ELK3P41970 407 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 SKIV2L2P42285 1042 aaKnown RBP2.37□□□□□ -2.03
VPS13A-208ENST00000423463 LEPRP48357 1165 aaKnown RBP2.37□□□□□ -2.03
VPS13A-208ENST00000423463 EIF3BP55884 814 aaKnown RBP2.37□□□□□ -2.03
VPS13A-208ENST00000423463 CLDN6P56747 220 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 PDIA2Q13087 525 aaKnown RBP2.37□□□□□ -2.03
VPS13A-208ENST00000423463 GPR18Q14330 331 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 GPR68Q15743 365 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 KCTD19Q17RG1 926 aaPredicted RBP2.37□□□□□ -2.03
VPS13A-208ENST00000423463 HSP90AA5PQ58FG0 334 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 PLEKHS1Q5SXH7 462 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 STEAP4Q687X5 459 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 C8orf74Q6P047 294 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 TTC23LQ6PF05 361 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 ARHGAP22Q7Z5H3 698 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 LDB1Q86U70 411 aaPredicted RBP2.37□□□□□ -2.03
VPS13A-208ENST00000423463 KCNMB4Q86W47 210 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 TBC1D21Q8IYX1 336 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 SLC22A15Q8IZD6 547 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 FBXO39Q8N4B4 442 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 HORMAD2Q8N7B1 307 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 CEP112Q8N8E3 955 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 C9orf106Q8NAJ2 232 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 ACVR1CQ8NER5 493 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 RFWD2Q8NHY2 731 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 MPLKIPQ8TAP9 179 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 GSDMBQ8TAX9 411 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 PYROXD1Q8WU10 500 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 NCSTNQ92542 709 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 LPGAT1Q92604 370 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 HDAC2Q92769 488 aaKnown RBP2.37□□□□□ -2.03
VPS13A-208ENST00000423463 ART4Q93070 314 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 RNF125Q96EQ8 232 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 RNFT2Q96EX2 444 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 ATXN7L3BQ96GX2 97 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 RMDN2Q96LZ7 410 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 C12orf66Q96MD2 445 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 ZNF578Q96N58 590 aaPredicted RBP2.37□□□□□ -2.03
VPS13A-208ENST00000423463 BIRC8Q96P09 236 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 CD180Q99467 661 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 CMKLR1Q99788 373 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 LRRC1Q9BTT6 524 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 TSPYL1Q9H0U9 437 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 RBM38Q9H0Z9 239 aaKnown RBP2.37□□□□□ -2.03
VPS13A-208ENST00000423463 CCDC68Q9H2F9 335 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 DPH5Q9H2P9 285 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 TFB2MQ9H5Q4 396 aaKnown RBP2.37□□□□□ -2.03
VPS13A-208ENST00000423463 KIR3DX1Q9H7L2 352 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 SYNDIG1Q9H7V2 258 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 FAM114A2Q9NRY5 505 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 IMP3Q9NV31 184 aaKnown RBP2.37□□□□□ -2.03
VPS13A-208ENST00000423463 NSMCE4AQ9NXX6 385 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 GRHL1Q9NZI5 618 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 SLC24A2Q9UI40 661 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 KNTC1P50748 2209 aa2.37□□□□□ -2.03
VPS13A-208ENST00000423463 TDRD6O60522 2096 aaKnown RBP2.37□□□□□ -2.03
VPS13A-208ENST00000423463 IGHV5-10-1A0A0J9YXX1 117 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 GAGE10A6NGK3 116 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 GOLGA8KD6RF30 607 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 GOLGA8TH3BQL2 631 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 VPS26AO75436 327 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 ALPLP05186 524 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 ANKRD34CP0C6C1 535 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 CBSLP0DN79 551 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 THRAP10827 490 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 ITGB6P18564 788 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 TNFSF8P32971 234 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 CSTF2P33240 577 aaKnown RBP eCLIP2.36□□□□□ -2.03
VPS13A-208ENST00000423463 SHMT2P34897 504 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 CBSP35520 551 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 CASP2P42575 452 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 PDX1P52945 283 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 PLTPP55058 493 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 CASP6P55212 293 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 ERVPABLB-1P60509 514 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 MRPS25P82663 173 aaKnown RBP2.36□□□□□ -2.03
VPS13A-208ENST00000423463 HSPA14Q0VDF9 509 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 ABRQ12979 859 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 IL13RA2Q14627 380 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 CRYMQ14894 314 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 KYNUQ16719 465 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 TTLL9Q3SXZ7 439 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 CTSL3PQ5NE16 218 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 VWA5B1Q5TIE3 1220 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 NKAIN2Q5VXU1 208 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 ZNF470Q6ECI4 717 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 LRRC8EQ6NSJ5 796 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 UGT3A1Q6NUS8 523 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 UNC5DQ6UXZ4 953 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 Q6ZTK2 550 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 NEK10Q6ZWH5 1172 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 OTOAQ7RTW8 1153 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 PRSS42Q7Z5A4 293 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 OOSP2Q86WS3 158 aa2.36□□□□□ -2.03
VPS13A-208ENST00000423463 KMT5CQ86Y97 462 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms