RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 MEX3DQ86XN8 651 aaKnown RBP9.27□□□□□ -0.93
CD44-206ENST00000415148 ZNF740Q8NDX6 193 aa9.27□□□□□ -0.93
CD44-206ENST00000415148 SIMC1Q8NDZ2 872 aa9.27□□□□□ -0.93
CD44-206ENST00000415148 OR52I1Q8NGK6 324 aa9.27□□□□□ -0.93
CD44-206ENST00000415148 UBASH3BQ8TF42 649 aa9.27□□□□□ -0.93
CD44-206ENST00000415148 ZBED6CLQ96FA7 236 aaPredicted RBP9.27□□□□□ -0.93
CD44-206ENST00000415148 SPATA5L1Q9BVQ7 753 aa9.27□□□□□ -0.93
CD44-206ENST00000415148 SORBS1Q9BX66 1292 aaKnown RBP9.27□□□□□ -0.93
CD44-206ENST00000415148 ZNF717Q9BY31 904 aaPredicted RBP9.27□□□□□ -0.93
CD44-206ENST00000415148 ZDHHC5Q9C0B5 715 aa9.27□□□□□ -0.93
CD44-206ENST00000415148 ZBP1Q9H171 429 aa9.27□□□□□ -0.93
CD44-206ENST00000415148 FGF20Q9NP95 211 aaPredicted RBP9.27□□□□□ -0.93
CD44-206ENST00000415148 SEMA3GQ9NS98 782 aa9.27□□□□□ -0.93
CD44-206ENST00000415148 TDP1Q9NUW8 608 aa9.27□□□□□ -0.93
CD44-206ENST00000415148 ZSCAN32Q9NX65 697 aa9.27□□□□□ -0.93
CD44-206ENST00000415148 TAS2R7Q9NYW3 318 aa9.27□□□□□ -0.93
CD44-206ENST00000415148 SEC14L3Q9UDX4 400 aa9.27□□□□□ -0.93
CD44-206ENST00000415148 ADAM29Q9UKF5 820 aa9.27□□□□□ -0.93
CD44-206ENST00000415148 A4GNTQ9UNA3 340 aa9.27□□□□□ -0.93
CD44-206ENST00000415148 CARD8Q9Y2G2 431 aa9.27□□□□□ -0.93
CD44-206ENST00000415148 SH3BP5O60239 455 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 GAAP10253 952 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 ERGP11308 486 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 GSTM3P21266 225 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 GIPRP48546 466 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 SLC9A3P48764 834 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 EPHA5P54756 1037 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 TRA2BP62995 288 aaKnown RBP9.26□□□□□ -0.93
CD44-206ENST00000415148 HNRNPA0Q13151 305 aaKnown RBP9.26□□□□□ -0.93
CD44-206ENST00000415148 RPA4Q13156 261 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 EFR3AQ14156 821 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 GRIN2CQ14957 1233 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 GPAT3Q53EU6 434 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 ENTPD8Q5MY95 495 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 C22orf42Q6IC83 251 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 C1orf94Q6P1W5 598 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 FAM131AQ6UXB0 335 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 OLIG3Q7RTU3 272 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 TRAPPC5Q8IUR0 188 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 ADGRF3Q8IZF5 1079 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 RDH10Q8IZV5 341 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 TBC1D19Q8N5T2 526 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 KREMEN2Q8NCW0 462 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 OR4D11Q8NGI4 311 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 SLC7A13Q8TCU3 470 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 CYB5D2Q8WUJ1 264 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 AP3S1Q92572 193 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 FGF11Q92914 225 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 NELL2Q99435 816 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 AIF1LQ9BQI0 150 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 MS4A8Q9BY19 250 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 PCBD2Q9H0N5 130 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 OR2AG1Q9H205 316 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 SLAMF7Q9NQ25 335 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 SIRT3Q9NTG7 399 aaPredicted RBP9.26□□□□□ -0.93
CD44-206ENST00000415148 TVP23BQ9NYZ1 205 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 P2RX2Q9UBL9 471 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 MALT1Q9UDY8 824 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 PLEKHB1Q9UF11 243 aaPredicted RBP9.26□□□□□ -0.93
CD44-206ENST00000415148 DNAH14Q0VDD8 3507 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 MTCL1Q9Y4B5 1905 aaKnown RBP9.26□□□□□ -0.93
CD44-206ENST00000415148 ABHD14A-ACY1A0A1B0GW23 586 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 TMEM129A0AVI4 362 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 CCDC182A6NF36 153 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 FABP12A6NFH5 140 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 ANHXE9PGG2 379 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 TLX2O43763 284 aaPredicted RBP9.26□□□□□ -0.93
CD44-206ENST00000415148 CPNE3O75131 537 aaKnown RBP9.26□□□□□ -0.93
CD44-206ENST00000415148 NME6O75414 186 aaPredicted RBP9.26□□□□□ -0.93
CD44-206ENST00000415148 POP7O75817 140 aaKnown RBP9.26□□□□□ -0.93
CD44-206ENST00000415148 NR2F6P10588 404 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 PTBP1P26599 531 aaKnown RBP eCLIP9.26□□□□□ -0.933e-6■■■■■ 30.2
CD44-206ENST00000415148 GPC1P35052 558 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 CD79BP40259 229 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 CCT3P49368 545 aaKnown RBP9.26□□□□□ -0.93
CD44-206ENST00000415148 SMSP52788 366 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 WNT4P56705 351 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 TLE2Q04725 743 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 CHRNEQ04844 493 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 UBE3AQ05086 875 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 RAB40BQ12829 278 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 TPBGQ13641 420 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 SPDYE7PQ495Y7 208 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 SYT14P1Q58G82 188 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 LY6G5CQ5SRR4 150 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 SLC35F1Q5T1Q4 408 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 DDI2Q5TDH0 399 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 DEF8Q6ZN54 512 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 PARS2Q7L3T8 475 aaKnown RBP9.26□□□□□ -0.93
CD44-206ENST00000415148 HMGN2P46Q86SG4 172 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 LAPTM4BQ86VI4 370 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 COMTD1Q86VU5 262 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 C17orf64Q86WR6 236 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 VWA5B2Q8N398 1253 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 CAMKK1Q8N5S9 505 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 VN1R2Q8NFZ6 395 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 OR4M1Q8NGD0 313 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 NR4A3Q92570 626 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 KCTD7Q96MP8 289 aa9.26□□□□□ -0.93
CD44-206ENST00000415148 DCLRE1CQ96SD1 692 aaKnown RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms