RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 TLDC1Q6P9B6 456 aa13.18□□□□□ -0.3
GPNMB-203ENST00000409458 DGAT2L6Q6ZPD8 337 aa13.18□□□□□ -0.3
GPNMB-203ENST00000409458 GPR135Q8IZ08 494 aa13.18□□□□□ -0.3
GPNMB-203ENST00000409458 OR2L13Q8N349 312 aa13.18□□□□□ -0.3
GPNMB-203ENST00000409458 OR51Q1Q8NH59 317 aa13.18□□□□□ -0.3
GPNMB-203ENST00000409458 MIPOL1Q8TD10 442 aa13.18□□□□□ -0.3
GPNMB-203ENST00000409458 TPD52L3Q96J77 140 aa13.18□□□□□ -0.3
GPNMB-203ENST00000409458 MS4A4EQ96PG1 132 aa13.18□□□□□ -0.3
GPNMB-203ENST00000409458 YY1AP1Q9H869 796 aa13.18□□□□□ -0.3
GPNMB-203ENST00000409458 COQ10BQ9H8M1 238 aa13.18□□□□□ -0.3
GPNMB-203ENST00000409458 CLK4Q9HAZ1 481 aaKnown RBP13.18□□□□□ -0.3
GPNMB-203ENST00000409458 P2RX2Q9UBL9 471 aa13.18□□□□□ -0.3
GPNMB-203ENST00000409458 NDOR1Q9UHB4 597 aa13.18□□□□□ -0.3
GPNMB-203ENST00000409458 BLACEA4D250 179 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 OR2W5A6NFC9 320 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 C5orf58C9J3I9 102 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 SUV39H1O43463 412 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 CT62P0C5K7 136 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 ZNF26P17031 533 aaPredicted RBP13.17□□□□□ -0.3
GPNMB-203ENST00000409458 ALAS2P22557 587 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 PPP2R1BP30154 601 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 GRK6P43250 576 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 XCR1P46094 333 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 MAN2A2P49641 1150 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 SLC13A2Q13183 592 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 SYPL1Q16563 259 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 PRICKLE4Q2TBC4 344 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 TRMT12Q53H54 448 aaKnown RBP13.17□□□□□ -0.3
GPNMB-203ENST00000409458 ZNF595Q8IYB9 648 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 LGI4Q8N135 537 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 XAGE5Q8WWM1 108 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 RNF31Q96EP0 1072 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 MVB12AQ96EY5 273 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 VPS50Q96JG6 964 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 CNDP2Q96KP4 475 aaKnown RBP13.17□□□□□ -0.3
GPNMB-203ENST00000409458 ZNF570Q96NI8 536 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 OR7D2Q96RA2 312 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 DPYSL5Q9BPU6 564 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 NDC1Q9BTX1 674 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 NTN4Q9HB63 628 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 PRTFDC1Q9NRG1 225 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 ADPRHL2Q9NX46 363 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 MAT2BQ9NZL9 334 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 PTGFRNQ9P2B2 879 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 SERTAD3Q9UJW9 196 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 OAZ3Q9UMX2 235 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 MRPS33Q9Y291 106 aaKnown RBP13.17□□□□□ -0.3
GPNMB-203ENST00000409458 CLDN16Q9Y5I7 305 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 KCNE3Q9Y6H6 103 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 NUP210LQ5VU65 1888 aa13.17□□□□□ -0.3
GPNMB-203ENST00000409458 M0QX08 132 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 NTN3O00634 580 aaPredicted RBP13.16□□□□□ -0.3
GPNMB-203ENST00000409458 SOCS2O14508 198 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 DSCR3O14972 297 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 SLC28A2O43868 658 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 DEAF1O75398 565 aaPredicted RBP13.16□□□□□ -0.3
GPNMB-203ENST00000409458 JRKO75564 520 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 PRSS23O95084 383 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 CST1P01037 141 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 SLC35E2P0CK97 266 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 ACADSP16219 412 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 MAGEA8P43361 318 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 ANXA11P50995 505 aaKnown RBP13.16□□□□□ -0.3
GPNMB-203ENST00000409458 CLCN2P51788 898 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 KCNJ10P78508 379 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 BTG2P78543 158 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 IGLV3-21P80748 117 aaPredicted RBP13.16□□□□□ -0.3
GPNMB-203ENST00000409458 VLDLRP98155 873 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 MGAT2Q10469 447 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.16□□□□□ -0.3
GPNMB-203ENST00000409458 MFSD12Q6NUT3 480 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 DBX2Q6ZNG2 339 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 FKBP9P1Q75LS8 142 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 OLIG3Q7RTU3 272 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 WDR53Q7Z5U6 358 aaPredicted RBP13.16□□□□□ -0.3
GPNMB-203ENST00000409458 ZDHHC21Q8IVQ6 265 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 SLITRK4Q8IW52 837 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 GALNT4Q8N4A0 578 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 ZNF675Q8TD23 568 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 GFM1Q96RP9 751 aaKnown RBP13.16□□□□□ -0.3
GPNMB-203ENST00000409458 SLC29A1Q99808 456 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 DOHHQ9BU89 302 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 RUBCNLQ9H714 662 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 THUMPD1Q9NXG2 353 aaKnown RBP13.16□□□□□ -0.3
GPNMB-203ENST00000409458 ABCG2Q9UNQ0 655 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 PCDHGB2Q9Y5G2 931 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 FER1L5A0AVI2 2057 aa13.16□□□□□ -0.3
GPNMB-203ENST00000409458 COL5A1P20908 1838 aaPredicted RBP13.16□□□□□ -0.3
GPNMB-203ENST00000409458 D6RAR5 112 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 hCG_2039718K7EN88 272 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 PDLIM1O00151 329 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 OR10H2O60403 315 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 CTNSO60931 367 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 SLITRK5O94991 958 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 PGM3O95394 542 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 FABP3P05413 133 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 ATP6V1C1P21283 382 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 MAOAP21397 527 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 SELENOWP63302 87 aa13.15□□□□□ -0.3
GPNMB-203ENST00000409458 ACY1Q03154 408 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms