RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SYPP08247 313 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 LUMP51884 338 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 FAM205BPQ63HN1 556 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 USB1Q9BQ65 265 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 RBPJLQ9UBG7 517 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 KCTD3Q9Y597 815 aa12.24□□□□□ -0.45
CCDC88C-204ENST00000389857 MAN2B1O00754 1011 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 HTRA2O43464 458 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 ATP6V1G1O75348 118 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 RBMS1P29558 406 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 FAM69BQ5VUD6 431 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 TMEM236Q5W0B7 351 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 OR52E8Q6IFG1 317 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 RHEBL1Q8TAI7 183 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 MALSU1Q96EH3 234 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 OR4K3Q96R72 315 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 FTSJ1Q9UET6 329 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 EEDO75530 441 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 CSF2P04141 144 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 HTR1EP28566 365 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 WDR20Q8TBZ3 569 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 SPTSSAQ969W0 71 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 PPP1R14DQ9NXH3 145 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 ERVK-19Q9WJR5 959 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 NAALAD2Q9Y3Q0 740 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 ZNF860A6NHJ4 632 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 CD8B2A6NJW9 211 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 CD8BP10966 210 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 ETV3P41162 512 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 SF3B4Q15427 424 aaKnown RBP eCLIP12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 CTC1Q2NKJ3 1217 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 AWAT2Q6E213 333 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 OR2B2Q9GZK3 357 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 SUSD2Q9UGT4 822 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 ANKRD33BA6NCL7 494 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 GPR37L1O60883 481 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 PORP16435 677 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 AKR1C4P17516 323 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 CAMLGP49069 296 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 GPX6P59796 221 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 LAPTM4AQ15012 233 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 NTRK2Q16620 822 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 GPR157Q5UAW9 335 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 SPHK2Q9NRA0 654 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 C2orf72A6NCS6 295 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 UNCXA6NJT0 531 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 HSBP1L1C9JCN9 74 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 OR2B3O76000 313 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 PRKXP51817 358 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 CRYZQ08257 329 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 PLXDC1Q8IUK5 500 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 TMEM151BQ8IW70 566 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 MYRFLQ96LU7 910 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 A0A0A6YYH2 397 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 A0A0D9SEW6 157 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 A6NJ64 397 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 SHOXO15266 292 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 PLATP00750 562 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 NDUFV2P19404 249 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 ACTBP60709 375 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 ERVK-16P61578 105 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 ACTG1P63261 375 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 CATSPEREQ5SY80 951 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 METTL25Q8N6Q8 603 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 HORMAD2Q8N7B1 307 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 THAP3Q8WTV1 239 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 ZNF689Q96CS4 500 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 SCRN2Q96FV2 425 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 ROBO1Q9Y6N7 1651 aa12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 VIRMAQ69YN4 1812 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-204ENST00000389857 CKMT1AP12532 417 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 CHMP24386 653 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 GCGRP47871 477 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 LILRB2Q8N423 598 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 OR56B2PQ8NGI1 322 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 ASB15Q8WXK1 588 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 RANBP9Q96S59 729 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 CDC6Q99741 560 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 PAPOLGQ9BWT3 736 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 SRA1Q9HD15 236 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 CD34P28906 385 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 TBPL1P62380 186 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 ZNF616Q08AN1 781 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 MAMDC2Q7Z304 686 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 TMEM173Q86WV6 379 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 NANSQ9NR45 359 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 NKX1-2Q9UD57 310 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 LTN1O94822 1766 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 OR6C6A6NF89 314 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 COCHO43405 550 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 GGT5P36269 586 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 SUOXP51687 545 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 AKR1C2P52895 323 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 CES4AQ5XG92 561 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 SERINC5Q86VE9 423 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 SSX3Q99909 188 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 JUPP14923 745 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 RPS2P15880 293 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 C22orf42Q6IC83 251 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 OSTM1Q86WC4 334 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms