RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 TGM7Q96PF1 710 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 RTP3Q9BQQ7 232 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 TPSD1Q9BZJ3 242 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 CENPMQ9NSP4 180 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 USP22Q9UPT9 525 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 H3BQ06 376 aaPredicted RBP14.32□□□□□ -0.12
NPHP4-201ENST00000378156 PEX12O00623 359 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 APBB3O95704 486 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 STSP08842 583 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 CKMT1AP12532 417 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 HNRNPA2B1P22626 353 aaKnown RBP14.32□□□□□ -0.12
NPHP4-201ENST00000378156 GABRA3P34903 492 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 VLDLRP98155 873 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 PUS10Q3MIT2 529 aaKnown RBP14.32□□□□□ -0.12
NPHP4-201ENST00000378156 OTUD1Q5VV17 481 aaPredicted RBP14.32□□□□□ -0.12
NPHP4-201ENST00000378156 DPPA4Q7L190 304 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 COMMD6Q7Z4G1 85 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 OR7G3Q8NG95 312 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 SUSD2Q9UGT4 822 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 ZSCAN5BA6NJL1 495 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 H3BMQ9 156 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 UBFD1O14562 309 aaKnown RBP14.32□□□□□ -0.12
NPHP4-201ENST00000378156 THEGLP0DJG4 465 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 NPR2P20594 1047 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 DRD1P21728 446 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 RASGEF1BQ0VAM2 473 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 ARL9Q6T311 187 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 SH2D5Q6ZV89 423 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 TMEM80Q96HE8 168 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 COG8Q96MW5 612 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 NPLQ9BXD5 320 aaPredicted RBP14.32□□□□□ -0.12
NPHP4-201ENST00000378156 TMEM184CQ9NVA4 438 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 PRSS21Q9Y6M0 314 aa14.32□□□□□ -0.12
NPHP4-201ENST00000378156 BLOC1S5-TXNDC5H3BN57 136 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 BOLA2-SMG1P6H3BVE0 249 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 IFNA21P01568 189 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 HNRNPKP61978 463 aaKnown RBP eCLIP14.31□□□□□ -0.12
NPHP4-201ENST00000378156 ZNF33BQ06732 778 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 TUBB3Q13509 450 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 CTSL3PQ5NE16 218 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 OR4C11Q6IEV9 310 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 GRHL2Q6ISB3 625 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 DNM1P34Q6PK57 102 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 KLHDC8AQ8IYD2 350 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 LRRC25Q8N386 305 aaPredicted RBP14.31□□□□□ -0.12
NPHP4-201ENST00000378156 SPATA9Q9BWV2 254 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 MARCH5Q9NX47 278 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 ECM29Q5VYK3 1845 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 NHSQ6T4R5 1651 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 ARHGEF15O94989 841 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 BTBD16Q32M84 506 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 GFOD2Q3B7J2 385 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 FAM180BQ6P0A1 224 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 SPNS2Q8IVW8 549 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 OSTF1Q92882 214 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 SH3YL1Q96HL8 342 aaPredicted RBP14.31□□□□□ -0.12
NPHP4-201ENST00000378156 WACQ9BTA9 647 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 RANBP3Q9H6Z4 567 aaPredicted RBP14.31□□□□□ -0.12
NPHP4-201ENST00000378156 METTL7AQ9H8H3 244 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 SCAMP2O15127 329 aaKnown RBP14.31□□□□□ -0.12
NPHP4-201ENST00000378156 ZNF217O75362 1048 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 HOXD9P28356 352 aaPredicted RBP14.31□□□□□ -0.12
NPHP4-201ENST00000378156 TAS2R43P59537 309 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 NCS1P62166 190 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 METTL2BQ6P1Q9 378 aaKnown RBP14.31□□□□□ -0.12
NPHP4-201ENST00000378156 PARS2Q7L3T8 475 aaKnown RBP14.31□□□□□ -0.12
NPHP4-201ENST00000378156 OR5AR1Q8NGP9 310 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 STOML3Q8TAV4 291 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 PIP5K1AQ99755 562 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 TMED9Q9BVK6 235 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 BRD7Q9NPI1 651 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 TMEM30AQ9NV96 361 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 CEPT1Q9Y6K0 416 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 TIMP2P16035 220 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 ZNF550Q7Z398 422 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 TMEM102Q8N9M5 508 aaPredicted RBP14.31□□□□□ -0.12
NPHP4-201ENST00000378156 MFSD2AQ8NA29 543 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 OR5T3Q8NGG3 340 aa14.31□□□□□ -0.12
NPHP4-201ENST00000378156 ADAD1Q96M93 576 aaKnown RBP14.31□□□□□ -0.12
NPHP4-201ENST00000378156 SPATA6Q9NWH7 488 aaPredicted RBP14.31□□□□□ -0.12
NPHP4-201ENST00000378156 HIDE1A8MVS5 230 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 GRXCR1A8MXD5 290 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 SLC19A2O60779 497 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 RETP07949 1114 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 ARNTP27540 789 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 MLLT1Q03111 559 aaPredicted RBP14.3□□□□□ -0.12
NPHP4-201ENST00000378156 FIGLAQ6QHK4 219 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 USP53Q70EK8 1073 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 OR51I1Q9H343 314 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 ACOT8O14734 319 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 DUX1O43812 170 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 UGDHO60701 494 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 SDC1P18827 310 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 HOXC12P31275 282 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 SLC6A6P31641 620 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 GRK5P34947 590 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 MAP3K8P41279 467 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 RABIFP47224 123 aa14.3□□□□□ -0.12
NPHP4-201ENST00000378156 DUSP3P51452 185 aaPredicted RBP14.3□□□□□ -0.12
NPHP4-201ENST00000378156 HHEXQ03014 270 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms