RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ADAM12O43184 909 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 CSDE1O75534 798 aaKnown RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 B3GALNT1O75752 331 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 HPP00738 406 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 CXCL10P02778 98 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 SERPINF2P08697 491 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 ADORA3P0DMS8 318 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 FCGR2BP31994 310 aaPredicted RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 FCGR2CP31995 323 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 RPL9P32969 192 aaKnown RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 ALDH3B1P43353 468 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 SSTP61278 116 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 RPS4XP62701 263 aaKnown RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 SLC17A1Q14916 467 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 CLPPQ16740 277 aaPredicted RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 ECSCRQ19T08 205 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 HIST2H2AA3Q6FI13 130 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 CDHR3Q6ZTQ4 885 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 MCM10Q7L590 875 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 LINC00518Q8N0U6 118 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 KDM8Q8N371 416 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 LRRC17Q8N6Y2 441 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 CNNM3Q8NE01 707 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 OR6F1Q8NGZ6 308 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 GOLGA5Q8TBA6 731 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 SSC4DQ8WTU2 575 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 ZDHHC19Q8WVZ1 309 aaPredicted RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 TMEM45BQ96B21 275 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 TBC1D31Q96DN5 1066 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 SAMD8Q96LT4 415 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 CCDC28BQ9BUN5 200 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 HPS4Q9NQG7 708 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 CNOT2Q9NZN8 540 aaKnown RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 ISY1Q9ULR0 285 aaKnown RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 PLA2G4CQ9UP65 541 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 NIP7Q9Y221 180 aaKnown RBP eCLIP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 ATG4BQ9Y4P1 393 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 KLF2Q9Y5W3 355 aaPredicted RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 CLCA3PQ9Y6N3 262 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 IGLV4-3A0A075B6K6 122 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 TRBV5-4A0A0C4DH59 114 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 IGLON5A6NGN9 336 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 ZNF724A8MTY0 619 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 ARHGEF33A8MVX0 844 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 FBP2O00757 339 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 SH2D1BO14796 132 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 DUSP11O75319 330 aaKnown RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 HIST1H2AGP0C0S8 130 aaPredicted RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 MBL2P11226 248 aaPredicted RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 KLK2P20151 261 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 IL10P22301 178 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 TRIM23P36406 574 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 CD86P42081 329 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 ZNF131P52739 623 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 CRYBA2P53672 197 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 SLC26A5P58743 744 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 GMFBP60983 142 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 FKBP3Q00688 224 aaKnown RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 KLF5Q13887 457 aaPredicted RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 SMC1AQ14683 1233 aaKnown RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 ZNF146Q15072 292 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 UPP1Q16831 310 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 MS4A18Q3C1V0 323 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 LDLRAP1Q5SW96 308 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 TEX35Q5T0J7 233 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 LIPKQ5VXJ0 399 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 STEAP1BQ6NZ63 245 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 YRDCQ86U90 279 aaKnown RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 HIST2H2ABQ8IUE6 130 aaPredicted RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 ICA1LQ8NDH6 482 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 CHDHQ8NE62 594 aaPredicted RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 PHYHIPQ92561 330 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 P3H4Q92791 437 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 HIST1H2ACQ93077 130 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 C11orf52Q96A22 123 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 MRPL38Q96DV4 380 aaKnown RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 DEFB118Q96PH6 123 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 RCHY1Q96PM5 261 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 CBWD1Q9BRT8 395 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 SOHLH2Q9NX45 425 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 ACTR3BQ9P1U1 418 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 ZNF346Q9UL40 294 aaKnown RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 ENTPD4Q9Y227 616 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 UBE4BO95155 1302 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 A0A087WWV3 80 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 MEI4A8MW99 385 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 K7ERI5 159 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 TRAFD1O14545 582 aaPredicted RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 RASGRF2O14827 1237 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 SSX5O60225 188 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 ZNF354AO60765 605 aaPredicted RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 PDGFBP01127 241 aaPredicted RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 APRTP07741 180 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 PPP2R1AP30153 589 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 CHRNA3P32297 505 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 CAMLGP49069 296 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 NPY2RP49146 381 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 NDUFV3P56181 108 aaKnown RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 NDPQ00604 133 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 ITPK1Q13572 414 aa1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms