RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ALAS2P22557 587 aa15.5■□□□□ 0.07
SDC4-201ENST00000372733 SNRPD2P62316 118 aaKnown RBP15.5■□□□□ 0.07
SDC4-201ENST00000372733 NFE2L1Q14494 772 aa15.5■□□□□ 0.07
SDC4-201ENST00000372733 SNAPC1Q16533 368 aa15.5■□□□□ 0.07
SDC4-201ENST00000372733 TYW3Q6IPR3 259 aaKnown RBP15.5■□□□□ 0.07
SDC4-201ENST00000372733 TRAPPC5Q8IUR0 188 aa15.5■□□□□ 0.07
SDC4-201ENST00000372733 LRRC56Q8IYG6 542 aaPredicted RBP15.5■□□□□ 0.07
SDC4-201ENST00000372733 TCTE3Q8IZS6 198 aa15.5■□□□□ 0.07
SDC4-201ENST00000372733 Q8N402 240 aa15.5■□□□□ 0.07
SDC4-201ENST00000372733 TP53I13Q8NBR0 393 aaPredicted RBP15.5■□□□□ 0.07
SDC4-201ENST00000372733 OR9A1PQ8NGU1 263 aa15.5■□□□□ 0.07
SDC4-201ENST00000372733 TRIM63Q969Q1 353 aa15.5■□□□□ 0.07
SDC4-201ENST00000372733 KIAA1143Q96AT1 154 aaPredicted RBP15.5■□□□□ 0.07
SDC4-201ENST00000372733 RNFT2Q96EX2 444 aa15.5■□□□□ 0.07
SDC4-201ENST00000372733 ZBED6CLQ96FA7 236 aaPredicted RBP15.5■□□□□ 0.07
SDC4-201ENST00000372733 TREX2Q9BQ50 279 aaPredicted RBP15.5■□□□□ 0.07
SDC4-201ENST00000372733 SIRT3Q9NTG7 399 aaPredicted RBP15.5■□□□□ 0.07
SDC4-201ENST00000372733 GIMAP4Q9NUV9 329 aa15.5■□□□□ 0.07
SDC4-201ENST00000372733 TMEM39AQ9NV64 488 aa15.5■□□□□ 0.07
SDC4-201ENST00000372733 RFXAPO00287 272 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 SLC30A4O14863 429 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 ZNF780AO75290 641 aaPredicted RBP15.49■□□□□ 0.07
SDC4-201ENST00000372733 CTSLP07711 333 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 DDCP20711 480 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 CPN2P22792 545 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 XPAP23025 273 aaPredicted RBP15.49■□□□□ 0.07
SDC4-201ENST00000372733 HLA-DMAP28067 261 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 MAPK12P53778 367 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 C3orf38Q5JPI3 329 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 TECPR1Q7Z6L1 1165 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 DDX53Q86TM3 631 aaKnown RBP15.49■□□□□ 0.07
SDC4-201ENST00000372733 PEX5LQ8IYB4 626 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 OR5D16Q8NGK9 328 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 OR5P2Q8WZ92 322 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 EXOSC8Q96B26 276 aaKnown RBP15.49■□□□□ 0.07
SDC4-201ENST00000372733 NLKQ9UBE8 527 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 CKAP5Q14008 2032 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 STK25O00506 426 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 AKR7A2O43488 359 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 PDE9AO76083 593 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 GIPRP48546 466 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 ZNF658BQ4V348 819 aaPredicted RBP15.49■□□□□ 0.07
SDC4-201ENST00000372733 ZNF366Q8N895 744 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 C19orf18Q8NEA5 215 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 AP3S1Q92572 193 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 FGF11Q92914 225 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 UPRTQ96BW1 309 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 MED18Q9BUE0 208 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 EGLN3Q9H6Z9 239 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 MAN2C1Q9NTJ4 1040 aa15.49■□□□□ 0.07
SDC4-201ENST00000372733 WASH3PC4AMC7 463 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 CASKO14936 926 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 MMP20O60882 483 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 TBX6O95947 436 aaPredicted RBP15.48■□□□□ 0.07
SDC4-201ENST00000372733 ELFN1P0C7U0 828 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 ERP29P30040 261 aaKnown RBP15.48■□□□□ 0.07
SDC4-201ENST00000372733 GZMKP49863 264 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 ALDH6A1Q02252 535 aaKnown RBP15.48■□□□□ 0.07
SDC4-201ENST00000372733 GRIN2CQ14957 1233 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 TRMT11Q7Z4G4 463 aaKnown RBP15.48■□□□□ 0.07
SDC4-201ENST00000372733 TMCO2Q7Z6W1 182 aaPredicted RBP15.48■□□□□ 0.07
SDC4-201ENST00000372733 KIF18BQ86Y91 864 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 SMPDL3AQ92484 453 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 UFD1Q92890 307 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 F2RL3Q96RI0 385 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 CITED4Q96RK1 184 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 FNDC11Q9BVV2 318 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 ZNF717Q9BY31 904 aaPredicted RBP15.48■□□□□ 0.07
SDC4-201ENST00000372733 OR2AG1Q9H205 316 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 PPP1R3EQ9H7J1 279 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 KCNK12Q9HB15 430 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 HCN1O60741 890 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 LALBAP00709 142 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 CA8P35219 290 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 IL12RB1P42701 662 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 MAPK9P45984 424 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 PPP3R1P63098 170 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 CNTN1Q12860 1018 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 TPBGQ13641 420 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 BTBD16Q32M84 506 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 TMEM215Q68D42 235 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 DEFB128Q7Z7B8 93 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 TMC8Q8IU68 726 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 ZNF557Q8N988 423 aaPredicted RBP15.48■□□□□ 0.07
SDC4-201ENST00000372733 TMEM145Q8NBT3 493 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 FBXO15Q8NCQ5 510 aaPredicted RBP15.48■□□□□ 0.07
SDC4-201ENST00000372733 SLC9A6Q92581 669 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 SNAPC3Q92966 411 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 GFM1Q96RP9 751 aaKnown RBP15.48■□□□□ 0.07
SDC4-201ENST00000372733 ZNF607Q96SK3 696 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 GON7Q9BXV9 100 aa15.48■□□□□ 0.07
SDC4-201ENST00000372733 RBFOX1Q9NWB1 397 aaKnown RBP15.48■□□□□ 0.07
SDC4-201ENST00000372733 NFKBIL1Q9UBC1 381 aaPredicted RBP15.48■□□□□ 0.07
SDC4-201ENST00000372733 A0A1W2PRQ8 180 aa15.47■□□□□ 0.07
SDC4-201ENST00000372733 PTGER1P34995 402 aa15.47■□□□□ 0.07
SDC4-201ENST00000372733 SMIM11AP58511 58 aa15.47■□□□□ 0.07
SDC4-201ENST00000372733 IL18Q14116 193 aa15.47■□□□□ 0.07
SDC4-201ENST00000372733 INSL4Q14641 139 aa15.47■□□□□ 0.07
SDC4-201ENST00000372733 PRAMEF14Q5SWL7 426 aa15.47■□□□□ 0.07
SDC4-201ENST00000372733 PRAMEF13Q5VWM6 474 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms