RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 BHLHB9Q6PI77 547 aa12.93□□□□□ -0.34
PTPRF-202ENST00000372405 WDR53Q7Z5U6 358 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-202ENST00000372405 PATL1Q86TB9 770 aaKnown RBP12.93□□□□□ -0.34
PTPRF-202ENST00000372405 SAMD14Q8IZD0 417 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-202ENST00000372405 OR2L13Q8N349 312 aa12.93□□□□□ -0.34
PTPRF-202ENST00000372405 TTC29Q8NA56 475 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-202ENST00000372405 DTWD2Q8NBA8 298 aa12.93□□□□□ -0.34
PTPRF-202ENST00000372405 GPR32P1Q8NGA4 272 aa12.93□□□□□ -0.34
PTPRF-202ENST00000372405 OR2I1PQ8NGU4 316 aa12.93□□□□□ -0.34
PTPRF-202ENST00000372405 SPPL2AQ8TCT8 520 aa12.93□□□□□ -0.34
PTPRF-202ENST00000372405 CCDC74AQ96AQ1 378 aa12.93□□□□□ -0.34
PTPRF-202ENST00000372405 RBCK1Q9BYM8 510 aa12.93□□□□□ -0.34
PTPRF-202ENST00000372405 C3orf14Q9HBI5 128 aa12.93□□□□□ -0.34
PTPRF-202ENST00000372405 EQTNQ9NQ60 294 aa12.93□□□□□ -0.34
PTPRF-202ENST00000372405 HCN3Q9P1Z3 774 aa12.93□□□□□ -0.34
PTPRF-202ENST00000372405 SEMA5BQ9P283 1151 aa12.93□□□□□ -0.34
PTPRF-202ENST00000372405 P2RX2Q9UBL9 471 aa12.93□□□□□ -0.34
PTPRF-202ENST00000372405 SPACA6W5XKT8 324 aa12.93□□□□□ -0.34
PTPRF-202ENST00000372405 C5orf58C9J3I9 102 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 TGFBR3LH3BV60 316 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 SLC28A2O43868 658 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 ATP1B1P05026 303 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 CHRM4P08173 479 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 MAGEA8P43361 318 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 GPLD1P80108 840 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 MAT1AQ00266 395 aaKnown RBP12.92□□□□□ -0.34
PTPRF-202ENST00000372405 MYBPC1Q00872 1141 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 FAM53BQ14153 422 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 PUM1Q14671 1186 aaKnown RBP eCLIP12.92□□□□□ -0.34
PTPRF-202ENST00000372405 SYT16Q17RD7 645 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 INAVAQ3KP66 663 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 IFI44LQ53G44 452 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 TRMT12Q53H54 448 aaKnown RBP12.92□□□□□ -0.34
PTPRF-202ENST00000372405 SHQ1Q6PI26 577 aaKnown RBP12.92□□□□□ -0.34
PTPRF-202ENST00000372405 TMPRSS9Q7Z410 1059 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 LGI4Q8N135 537 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 OR4C6Q8NH72 309 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 TANKQ92844 425 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 OR7D2Q96RA2 312 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 NUDT22Q9BRQ3 303 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 EPB41L1Q9H4G0 881 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 THUMPD1Q9NXG2 353 aaKnown RBP12.92□□□□□ -0.34
PTPRF-202ENST00000372405 USE1Q9NZ43 259 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 E2F6O75461 281 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 NSA2O95478 260 aaKnown RBP12.92□□□□□ -0.34
PTPRF-202ENST00000372405 CLIC3O95833 236 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 HPRP00739 348 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 CFIP05156 583 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 FUT4P22083 530 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 CHN2P52757 468 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 ADARB1P78563 741 aaKnown RBP12.92□□□□□ -0.34
PTPRF-202ENST00000372405 HSD11B2P80365 405 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 MGAT2Q10469 447 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 SNAP47Q5SQN1 464 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 TMEM154Q6P9G4 183 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 DGAT2L6Q6ZPD8 337 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 COMTD1Q86VU5 262 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 PLXDC1Q8IUK5 500 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 ARMC8Q8IUR7 673 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 METTL27Q8N6F8 245 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-202ENST00000372405 FBXL20Q96IG2 436 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 AMBRA1Q9C0C7 1298 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 CAPN10Q9HC96 672 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 DDX18Q9NVP1 670 aaKnown RBP12.92□□□□□ -0.34
PTPRF-202ENST00000372405 TMEFF2Q9UIK5 374 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-202ENST00000372405 CLCA2Q9UQC9 943 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 CLDN16Q9Y5I7 305 aa12.92□□□□□ -0.34
PTPRF-202ENST00000372405 GPC6Q9Y625 555 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-202ENST00000372405 FER1L5A0AVI2 2057 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 SIGLEC6O43699 453 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 DPM1O60762 260 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 IFNA14P01570 189 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 CT62P0C5K7 136 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 NR2F1P10589 423 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 NDUFA9Q16795 377 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 ZIK1Q3SY52 487 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-202ENST00000372405 TCTE1Q5JU00 501 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 PERM1Q5SV97 790 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 GARNL3Q5VVW2 1013 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 MFSD12Q6NUT3 480 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 GUSBP11Q6P575 273 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 WDR74Q6RFH5 385 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-202ENST00000372405 CARFQ8N187 725 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 LZICQ8WZA0 190 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 PEX11GQ96HA9 241 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 SLC41A2Q96JW4 573 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 MS4A4EQ96PG1 132 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 ZNF300Q96RE9 604 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-202ENST00000372405 WFDC6Q9BQY6 131 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 GAREM1Q9H706 876 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 ENAMQ9NRM1 1142 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 THSD1Q9NS62 852 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 FBXO4Q9UKT5 387 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 SH3GLB1Q9Y371 365 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 SEC16AO15027 2179 aa12.91□□□□□ -0.34
PTPRF-202ENST00000372405 OR2W5A6NFC9 320 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 J3KTA2 159 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 ZIC2O95409 532 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-202ENST00000372405 THRBP10828 461 aa12.9□□□□□ -0.34
PTPRF-202ENST00000372405 RNH1P13489 461 aaKnown RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms