RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 JRKO75564 520 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 OR5F1O95221 314 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 CDK1P06493 297 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 CCR8P51685 355 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 WDR5P61964 334 aaKnown RBP11.32□□□□□ -0.6
USP1-201ENST00000339950 TGM3Q08188 693 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 C1orf61Q13536 156 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 AKIRIN2Q53H80 203 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 ENPP7Q6UWV6 458 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 HTR3DQ70Z44 454 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 NUDT13Q86X67 352 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 KLBQ86Z14 1044 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 UBE2E3Q969T4 207 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 ZG16BQ96DA0 208 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 CXorf40BQ96DE9 158 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 RDH14Q9HBH5 336 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 MRPS30Q9NP92 439 aaKnown RBP11.32□□□□□ -0.6
USP1-201ENST00000339950 ZNF639Q9UID6 485 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 BTNL2Q9UIR0 455 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 GSTK1Q9Y2Q3 226 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 ZNF780BQ9Y6R6 833 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 PLXNA1Q9UIW2 1896 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 HAT1O14929 419 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 PGRMC2O15173 223 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 GPR37L1O60883 481 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 CYP17A1P05093 508 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 PRG2P13727 222 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 RPL4P36578 427 aaKnown RBP11.32□□□□□ -0.6
USP1-201ENST00000339950 MC3RP41968 323 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 NRIP1P48552 1158 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 SLC9A5Q14940 896 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 MLIPQ5VWP3 458 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 CDC73Q6P1J9 531 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 SMPDL3AQ92484 453 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 ECHDC3Q96DC8 303 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 WDR26Q9H7D7 661 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 A0A1W2PQ09 198 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 PITPNM1O00562 1244 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 SLC16A6O15403 523 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 UPK1BO75841 260 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 IL1RNP18510 177 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 KELP23276 732 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 TALDO1P37837 337 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 RPS19P39019 145 aaKnown RBP11.32□□□□□ -0.6
USP1-201ENST00000339950 CDH11P55287 796 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 COX10Q12887 443 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 TOR1AIP1Q5JTV8 583 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 METTL3Q86U44 580 aaKnown RBP11.32□□□□□ -0.6
USP1-201ENST00000339950 ADIPOR2Q86V24 386 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 AMIGO1Q86WK6 493 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 LACC1Q8IV20 430 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 L3MBTL4Q8NA19 623 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 ARRDC3Q96B67 414 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 PPP1R16AQ96I34 528 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 SLC38A2Q96QD8 506 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 TREX2Q9BQ50 279 aaPredicted RBP11.32□□□□□ -0.6
USP1-201ENST00000339950 CHIAQ9BZP6 476 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 MMP27Q9H306 513 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 DUSP21Q9H596 190 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 MOV10Q9HCE1 1003 aaKnown RBP11.32□□□□□ -0.6
USP1-201ENST00000339950 NDOR1Q9UHB4 597 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 ZFR2Q9UPR6 939 aaKnown RBP11.32□□□□□ -0.6
USP1-201ENST00000339950 NYNRINQ9P2P1 1898 aaKnown RBP11.32□□□□□ -0.6
USP1-201ENST00000339950 IQCMA0A1B0GVH7 501 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 OR2W5A6NFC9 320 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 C1QTNF3-AMACRE9PGA6 284 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 M0R082 166 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 PVRP15151 417 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 ZNF30P17039 623 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 PTGS2P35354 604 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 TM4SF4P48230 202 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 STXBP1P61764 594 aaKnown RBP11.31□□□□□ -0.6
USP1-201ENST00000339950 ZNF630Q2M218 657 aaPredicted RBP11.31□□□□□ -0.6
USP1-201ENST00000339950 PODNL1Q6PEZ8 512 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 LRRTM4Q86VH4 590 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 OR9A2Q8NGT5 310 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 OVCA2Q8WZ82 227 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 TSACCQ96A04 125 aaPredicted RBP11.31□□□□□ -0.6
USP1-201ENST00000339950 RIPOR3Q96MK2 946 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 SECISBP2Q96T21 854 aaKnown RBP11.31□□□□□ -0.6
USP1-201ENST00000339950 WFDC6Q9BQY6 131 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 FAIM2Q9BWQ8 316 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 KLHL31Q9H511 634 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 SMURF1Q9HCE7 757 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.31□□□□□ -0.6
USP1-201ENST00000339950 SIP14410 1827 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 OR2A25A4D2G3 310 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 UNCXA6NJT0 531 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 A8MUA0 341 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 NUDT14O95848 222 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 ADRB3P13945 408 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 GNSP15586 552 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 BMP7P18075 431 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 POLR2CP19387 275 aaPredicted RBP11.31□□□□□ -0.6
USP1-201ENST00000339950 CD72P21854 359 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 ITGB8P26012 769 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 AHRP35869 848 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 HTR2BP41595 481 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 SLC6A12P48065 614 aa11.31□□□□□ -0.6
USP1-201ENST00000339950 VEGFBP49765 207 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms