RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 FAM118AQ9NWS6 357 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 NDUFAF4Q9P032 175 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 GPR52Q9Y2T5 361 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 PCDHGB6Q9Y5F9 930 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 H3BML4 177 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 HOXB9P17482 250 aaPredicted RBP12.06□□□□□ -0.48
SDC3-201ENST00000336798 GMPRP36959 345 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 LUMP51884 338 aaPredicted RBP12.06□□□□□ -0.48
SDC3-201ENST00000336798 NANOGP8Q6NSW7 305 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 VASH1Q7L8A9 365 aaPredicted RBP12.06□□□□□ -0.48
SDC3-201ENST00000336798 OR4K13Q8NH42 304 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 RAD9AQ99638 391 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 NANOGQ9H9S0 305 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 MGAT4CQ9UBM8 478 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 TEX264Q9Y6I9 313 aa12.06□□□□□ -0.48
SDC3-201ENST00000336798 CENPBD1B2RD01 187 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 BMP1P13497 986 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 TNFRSF1BP20333 461 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 RIDAP52758 137 aaKnown RBP12.05□□□□□ -0.48
SDC3-201ENST00000336798 BCL2L15Q5TBC7 163 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 ERMP1Q7Z2K6 904 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 TMEM130Q8N3G9 435 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 OR4D6Q8NGJ1 314 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 DAZLQ92904 295 aaKnown RBP12.05□□□□□ -0.48
SDC3-201ENST00000336798 RPS2P15880 293 aaKnown RBP12.05□□□□□ -0.48
SDC3-201ENST00000336798 GCGRP47871 477 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 MAP4K2Q12851 820 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 SMAD2Q15796 467 aaKnown RBP12.05□□□□□ -0.48
SDC3-201ENST00000336798 SLC27A4Q6P1M0 643 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 PLEKHG7Q6ZR37 379 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 OR51L1Q8NGJ5 315 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 HDHD5Q9BXW7 423 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 GPR62Q9BZJ7 368 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 PCDHGA8Q9Y5G5 932 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 VSTM2BA6NLU5 285 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 EMC8O43402 210 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 FOXD2O60548 495 aaPredicted RBP12.05□□□□□ -0.48
SDC3-201ENST00000336798 RAC2P15153 192 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 ZNF773Q6PK81 442 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 APCDD1Q8J025 514 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 SDSLQ96GA7 329 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 UHRF1Q96T88 793 aaPredicted RBP12.05□□□□□ -0.48
SDC3-201ENST00000336798 NXF5Q9H1B4 397 aaKnown RBP12.05□□□□□ -0.48
SDC3-201ENST00000336798 TMEM184CQ9NVA4 438 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 MAB21L2Q9Y586 359 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 SLC19A2O60779 497 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 HTR3BO95264 441 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 GKN3PP0CG01 181 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 EDN3P14138 238 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 PCSK2P16519 638 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 IL32P24001 234 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 SFRP4Q6FHJ7 346 aaPredicted RBP12.05□□□□□ -0.48
SDC3-201ENST00000336798 PSD4Q8NDX1 1056 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 MUS81Q96NY9 551 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 MAP3K3Q99759 626 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 TMEM246Q9BRR3 403 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 NTPCRQ9BSD7 190 aaKnown RBP12.05□□□□□ -0.48
SDC3-201ENST00000336798 RBM24Q9BX46 236 aaKnown RBP12.05□□□□□ -0.48
SDC3-201ENST00000336798 KIAA1210Q9ULL0 1709 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 FMO6PO60774 539 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 TMEM225BP0DP42 221 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 CRISP1P54107 249 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 GSTM4Q03013 218 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 RPS26P11Q5JNZ5 115 aaPredicted RBP12.05□□□□□ -0.48
SDC3-201ENST00000336798 KRBOX4Q5JUW0 171 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 OR4C11Q6IEV9 310 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 TRAM1L1Q8N609 369 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 OR5P2Q8WZ92 322 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 KCNIP1Q9NZI2 227 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 RARRES3Q9UL19 164 aa12.05□□□□□ -0.48
SDC3-201ENST00000336798 A0A0U1RQS6 177 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 A0A1W2PPW3 197 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 INMT-MINDY4F8WBC2 141 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 PET100P0DJ07 73 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 ZNF182P17025 639 aaPredicted RBP12.04□□□□□ -0.48
SDC3-201ENST00000336798 ZNF280AP59817 542 aaPredicted RBP12.04□□□□□ -0.48
SDC3-201ENST00000336798 APOFQ13790 326 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 GPRIN1Q7Z2K8 1008 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 PQLC3Q8N755 202 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 QPCTLQ9NXS2 382 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 PRSS56P0CW18 603 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 PGCP20142 388 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 HHEXQ03014 270 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 GALNT1Q10472 559 aaPredicted RBP12.04□□□□□ -0.48
SDC3-201ENST00000336798 NPRL3Q12980 569 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 ASRGL1Q7L266 308 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 MEX3DQ86XN8 651 aaKnown RBP12.04□□□□□ -0.48
SDC3-201ENST00000336798 UBQLN2Q9UHD9 624 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 LRRC42Q9Y546 428 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 ANHXE9PGG2 379 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 DIRAS3O95661 229 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 ADRB3P13945 408 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 GNB3P16520 340 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 BATFQ16520 125 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 OR6C4Q8NGE1 309 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 SGTBQ96EQ0 304 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 PIP5K1AQ99755 562 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 PAAF1Q9BRP4 392 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 URM1Q9BTM9 101 aaKnown RBP12.04□□□□□ -0.48
SDC3-201ENST00000336798 ERVK13-1Q9NX77 482 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms