RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 TICAM1Q8IUC6 712 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 TAGAPQ8N103 731 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 ZNF615Q8N8J6 731 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 ADCY4Q8NFM4 1077 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 TP53INP1Q96A56 240 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 ARL8AQ96BM9 186 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 ERP27Q96DN0 273 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 FCRL1Q96LA6 429 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 SGCZQ96LD1 299 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 WWTR1Q9GZV5 400 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 ZNF395Q9H8N7 513 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-201ENST00000332345 TIMMDC1Q9NPL8 285 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 OLAHQ9NV23 265 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 MAT2BQ9NZL9 334 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 BCAP29Q9UHQ4 241 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 NTNG1Q9Y2I2 539 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 KLF13Q9Y2Y9 288 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-201ENST00000332345 ATP6AP2A0A1C7CYW4 349 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 TCP11X1B4DZS4 312 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 NME2P1O60361 137 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 SKAP2O75563 359 aaPredicted RBP12.97□□□□□ -0.33
LIMS1-201ENST00000332345 ATP6AP2O75787 350 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 OR6B1O95007 311 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 DDX5P17844 614 aaKnown RBP12.97□□□□□ -0.33
LIMS1-201ENST00000332345 S1PR1P21453 382 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 NME2P22392 152 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 TACR1P25103 407 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 SOX3P41225 446 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 MGAT2Q10469 447 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 MAD2L1Q13257 205 aaPredicted RBP12.97□□□□□ -0.33
LIMS1-201ENST00000332345 ELOAQ14241 798 aaKnown RBP12.97□□□□□ -0.33
LIMS1-201ENST00000332345 EBPQ15125 230 aaKnown RBP12.97□□□□□ -0.33
LIMS1-201ENST00000332345 CEBPEQ15744 281 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 FAM180BQ6P0A1 224 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 FAM111BQ6SJ93 734 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 GALNTL5Q7Z4T8 443 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 ZNF227Q86WZ6 799 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 DND1Q8IYX4 353 aaKnown RBP12.97□□□□□ -0.33
LIMS1-201ENST00000332345 ZNF781Q8N8C0 355 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 RAB3IL1Q8TBN0 382 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 ZNF675Q8TD23 568 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 CTHRC1Q96CG8 243 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 TUBGCP3Q96CW5 907 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 EGLN2Q96KS0 407 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 ATP6V1G3Q96LB4 118 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 C3orf30Q96M34 536 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 TAAR6Q96RI8 345 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 GAL3ST4Q96RP7 486 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 HES7Q9BYE0 225 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 C20orf27Q9GZN8 174 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 CLMPQ9H6B4 373 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 THAP1Q9NVV9 213 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 PRODH2Q9UF12 536 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 BAIAP2L1Q9UHR4 511 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 ZNF639Q9UID6 485 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 HAO1Q9UJM8 370 aa12.97□□□□□ -0.33
LIMS1-201ENST00000332345 CAPN14A8MX76 684 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 MYO1GB0I1T2 1018 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 CBX6O95503 412 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 CLPSP04118 112 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 PRPS2P11908 318 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 BCKDHAP12694 445 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 EDN3P14138 238 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 SDC1P18827 310 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 NTSP30990 170 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 NRG3P56975 720 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 DUSP2Q05923 314 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 BST1Q10588 318 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 SMU1Q2TAY7 513 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 TRMT12Q53H54 448 aaKnown RBP12.96□□□□□ -0.33
LIMS1-201ENST00000332345 C6orf136Q5SQH8 315 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 RTL4Q6ZR62 310 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 MDGA2Q7Z553 956 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 R3HCC1LQ7Z5L2 792 aaKnown RBP12.96□□□□□ -0.33
LIMS1-201ENST00000332345 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.96□□□□□ -0.33
LIMS1-201ENST00000332345 ZGRF1Q86YA3 2104 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 FAM9CQ8IZT9 166 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 FNDC5Q8NAU1 212 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 GOLM1Q8NBJ4 401 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 POGLUT1Q8NBL1 392 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 ST6GALNAC3Q8NDV1 305 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 C17orf47Q8NEP4 570 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 NR4A3Q92570 626 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 TSSK3Q96PN8 268 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 SORT1Q99523 831 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 REEP4Q9H6H4 257 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 MANSC1Q9H8J5 431 aa12.96□□□□□ -0.33
LIMS1-201ENST00000332345 EXO1Q9UQ84 846 aaKnown RBP12.96□□□□□ -0.33
LIMS1-201ENST00000332345 EIF3LQ9Y262 564 aaKnown RBP12.96□□□□□ -0.33
LIMS1-201ENST00000332345 GCN1Q92616 2671 aaKnown RBP12.96□□□□□ -0.33
LIMS1-201ENST00000332345 EML6Q6ZMW3 1958 aa12.95□□□□□ -0.34
LIMS1-201ENST00000332345 ASPDHA6ND91 283 aa12.95□□□□□ -0.34
LIMS1-201ENST00000332345 ANKUB1A6NFN9 424 aa12.95□□□□□ -0.34
LIMS1-201ENST00000332345 AKAP10O43572 662 aa12.95□□□□□ -0.34
LIMS1-201ENST00000332345 PEX1O43933 1283 aa12.95□□□□□ -0.34
LIMS1-201ENST00000332345 TBX19O60806 448 aa12.95□□□□□ -0.34
LIMS1-201ENST00000332345 SLITRK5O94991 958 aa12.95□□□□□ -0.34
LIMS1-201ENST00000332345 PCSK2P16519 638 aa12.95□□□□□ -0.34
LIMS1-201ENST00000332345 GNLYP22749 145 aa12.95□□□□□ -0.34
LIMS1-201ENST00000332345 RPL3P39023 403 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms